| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,187,974 | T→C | 5.4% | intergenic (+79/‑131) | PP_3683 → / → PP_3684 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,187,974 | 0 | T | C | 5.4% | 221.3 / 2.3 | 74 | intergenic (+79/‑131) | PP_3683/PP_3684 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (32/38); new base C (2/2); total (34/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.39e-01 | |||||||||||
GCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTCGC > NC_002947/4187830‑4188120 | gCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAg < 7:211285/148‑1 (MQ=255)gCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGc < 3:265752/149‑1 (MQ=255)gCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGc < 7:158939/149‑1 (MQ=255) gttggttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCgg > 4:342473/1‑149 (MQ=255) gttggttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCgg > 4:348009/1‑149 (MQ=255) gttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTg > 2:254300/1‑149 (MQ=255) gttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTAGCAAGCGGCtt < 5:336698/148‑1 (MQ=255) ttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTgg < 3:326543/149‑1 (MQ=255) ttgATGCCTCATCGGTAGCTGCCGATCACGATGACAAGGATGAAGACAAGCCGTCCTAGCAGTAGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTgg > 4:10211/1‑149 (MQ=255) aTGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAGCCAAGCCGCTTAGCAAGCGGCTTggtt < 6:338066/148‑3 (MQ=255) aTGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGcc < 3:246995/148‑1 (MQ=255) aTGCCTCATCGGAAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCAT‑GCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGccc < 1:132910/148‑1 (MQ=255) tCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGTGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACg > 2:230313/1‑149 (MQ=255) gTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCt < 5:191746/124‑1 (MQ=255) gTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCt > 6:191746/1‑124 (MQ=255) gTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCt‑‑tt < 5:266803/149‑1 (MQ=255) gCTGCCGATCACGATGCCAAGGATGACGACATGCGGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCGCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCa < 8:70478/148‑1 (MQ=255) cTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATc > 2:335735/1‑149 (MQ=255) tGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATcc > 4:83243/1‑149 (MQ=255) tGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATcc > 2:27189/1‑149 (MQ=255) gCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCt > 5:200595/1‑149 (MQ=255) ccGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCTCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATcc < 1:140617/147‑1 (MQ=255) gATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCCAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTcgc < 1:254300/149‑1 (MQ=255) gATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTcgc < 2:215497/149‑1 (MQ=255) aCGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGc > 6:361512/1‑123 (MQ=255) aCGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGc < 5:361512/123‑1 (MQ=255) cAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGcc > 6:147371/1‑148 (MQ=255) aaGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTgc < 1:335735/149‑1 (MQ=255) aGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTgcg > 6:58398/1‑149 (MQ=255) aCAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTgcgcg > 7:277853/1‑149 (MQ=255) tCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCtt > 6:279081/1‑149 (MQ=255) cTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGc > 4:17193/1‑149 (MQ=255) gCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGcc < 3:342473/147‑1 (MQ=255) gCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGcc < 3:348009/147‑1 (MQ=255) gCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCt‑‑tt > 8:24/1‑99 (MQ=255) gCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCt‑‑tt < 7:24/99‑1 (MQ=255) gCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTg > 8:93994/1‑126 (MQ=255) gCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTg < 7:93994/126‑1 (MQ=255) gCTTTCTCAGCTCTCGGCGCTACCTCATGGCGCGCCCCGGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCaa < 2:301275/148‑1 (MQ=255) cTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCaaaa < 6:200595/149‑1 (MQ=255) tttCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAg < 3:10211/149‑1 (MQ=255) aGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCAt > 2:346940/1‑148 (MQ=255) aGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCAt > 2:248568/1‑148 (MQ=255) ctctCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTc > 5:331505/1‑90 (MQ=255) ctctCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTc < 6:331505/90‑1 (MQ=255) tcGGCGTTACCTCTTGGCGAGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGTCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATctct < 5:147371/147‑1 (MQ=255) gCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGa > 8:61935/1‑147 (MQ=255) aCCTCATGGCGCGCCCCTGGCGGGGCGCGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTc > 1:186538/1‑134 (MQ=255) aCCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTc < 2:186538/133‑1 (MQ=255) ccTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTcc < 3:17193/148‑1 (MQ=255) tCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAAGCAAAAGCTCATCTCTAGA‑TAGCGCCCAg > 8:162829/1‑149 (MQ=255) aTGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTa < 1:248568/149‑1 (MQ=255) aTGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTa < 1:346940/149‑1 (MQ=255) ggCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCTGAGTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTa > 1:290104/1‑149 (MQ=255) cgcgcCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAAc < 3:83243/149‑1 (MQ=255) cccTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTc > 8:52765/1‑149 (MQ=255) gCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTc < 8:277853/149‑1 (MQ=255) gCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTc < 7:61935/149‑1 (MQ=255) ggC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGACTAGCTCCCAGTACAACGTGTCGCTTCGcc < 1:27189/149‑1 (MQ=255) cGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTcc > 4:4963/1‑148 (MQ=255) gCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGa > 7:302953/1‑148 (MQ=255) tGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGc < 5:61595/140‑1 (MQ=255) tGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGc > 6:61595/1‑140 (MQ=255) gCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCaa < 5:279081/148‑1 (MQ=255) gTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGcc < 8:302953/149‑1 (MQ=255) gAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCtt > 8:30547/1‑149 (MQ=255) aCCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGTTTCGCCTCCGATCAAGCCTTgc < 7:52765/149‑1 (MQ=255) ccAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTgcg < 5:58398/149‑1 (MQ=255) ccAAGCCGCTTAGCAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTgcg > 7:234397/1‑149 (MQ=255) cAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGcc > 2:4777/1‑80 (MQ=255) cAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGcc < 1:4777/80‑1 (MQ=255) aaGCCGCTTAGCAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCt > 6:268924/1‑149 (MQ=255) gCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTc > 8:314010/1‑127 (MQ=255) gCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTc < 7:314010/127‑1 (MQ=255) gCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTcgc > 7:41446/1‑149 (MQ=255) gCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTc < 3:4963/147‑1 (MQ=255) tAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGt < 4:10514/140‑1 (MQ=255) tAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGt > 3:10514/1‑140 (MQ=255) | GCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGC‑CGGCTGGCGTGAACCAAGCCGCTTGCTAAGCGGCTTGGCCCTAACGGGCT‑‑TTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGA‑TAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTCGC > NC_002947/4187830‑4188120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |