Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,548,652 | G→T | 7.1% | A322S (GCC→TCC) ‡ | pydB → | bifunctional D‑hydantoinase/dihydropyrimidinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,548,652 | 0 | G | T | 7.1% | 175.3 / 2.9 | 56 | A322S (GCC→TCC) ‡ | pydB | bifunctional D‑hydantoinase/dihydropyrimidinase |
Reads supporting (aligned to +/- strand): ref base G (25/27); new base T (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 |
TCTACCGTGACCCGGACTGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCT > NC_002947/4548509‑4548795 | tCTACCGTCACCCGGACTGGCCCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGa < 8:81266/148‑1 (MQ=255) gTGACCCCGACTGGACCACCTCCGCCGGTTATGGTATGAGCCAGCAGTTCCGCCCACGAGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGAGCCGAGCAGaaa < 8:192238/149‑1 (MQ=255) aCCCGGACTGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGc < 5:234865/148‑1 (MQ=255) cccGGACTGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCa < 1:164272/149‑1 (MQ=255) cccGGACTGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCa > 6:5993/1‑149 (MQ=255) ccGGACTGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCAt > 1:14407/1‑149 (MQ=255) tGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCcg > 7:69606/1‑149 (MQ=255) gACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCcgc > 2:144668/1‑148 (MQ=255) caccGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCTCGGCGCAGaagca < 8:149818/135‑4 (MQ=255) caccGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCTCGGCGCAGaagca > 7:149818/1‑132 (MQ=255) accGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGaa > 1:314778/1‑131 (MQ=255) accGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGaa < 2:314778/131‑1 (MQ=255) ccgccgccgGTTATGTGATTAGCCCGCCGTTCCGCACACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCgacgac < 3:38540/149‑1 (MQ=255) ccgccgGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGcga < 4:306059/142‑1 (MQ=255) ccgccgGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGcga > 3:306059/1‑142 (MQ=255) tATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCTCGGCGCAGaag < 2:2378/120‑2 (MQ=255) tATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCTCGGCGCAGaag > 1:2378/1‑119 (MQ=255) gtgATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATccc > 7:101484/1‑149 (MQ=255) atgaGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCaa > 2:257355/1‑149 (MQ=255) tgaGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAAc < 3:311528/149‑1 (MQ=255) tgaGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAAc > 1:327337/1‑149 (MQ=255) gTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCAccgccg < 8:69606/149‑1 (MQ=255) ttCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCgg < 8:101484/149‑1 (MQ=255) tCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCgg > 3:55680/1‑148 (MQ=255) ccGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGc < 6:291682/148‑1 (MQ=255) aCGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCg > 4:238545/1‑146 (MQ=255) gAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCg > 7:41848/1‑149 (MQ=255) gAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCg > 6:256249/1‑149 (MQ=255) aaCACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGc < 4:55680/149‑1 (MQ=255) aaCACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGc < 5:5993/149‑1 (MQ=255) acacCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCa > 3:190094/1‑149 (MQ=255) cAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATgg > 8:124942/1‑148 (MQ=255) cTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACtgtg < 2:327337/149‑1 (MQ=255) cTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACtgtg > 6:359493/1‑149 (MQ=255) gcgcGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGAt < 3:238545/148‑1 (MQ=255) gcgcGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATg < 2:14407/149‑1 (MQ=255) gcgcGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATg < 5:256249/149‑1 (MQ=255) cgcgGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGa < 2:60214/146‑1 (MQ=255) cgcgGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGa > 1:60214/1‑146 (MQ=255) cgGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCg < 8:41848/149‑1 (MQ=255) cgGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCg < 7:124942/149‑1 (MQ=255) cTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCgggg > 6:297281/1‑149 (MQ=255) aGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCaa > 1:331344/1‑148 (MQ=255) gggCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCTCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCg > 8:271722/1‑149 (MQ=255) tGCACACAACCGCCACCGACCACTGCTGCTTCTGCGAAGAGCAGATAGCCATCGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCTCATGGCAGTACTGTGGTATGCCCTGGTCAACAGCCGGCGTTTg > 1:251537/1‑149 (MQ=255) cacaCCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTc < 7:88422/149‑1 (MQ=255) cacaCCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTc < 1:144668/149‑1 (MQ=255) accaccGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTa < 6:106975/111‑1 (MQ=255) accaccGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTa > 5:106975/1‑111 (MQ=255) caccgACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAAt < 5:359493/149‑1 (MQ=255) caccgACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTCTGGGATGCCGGGGTCAACTGCGGGCGTTTGGCGATGCACGAAt > 2:296344/1‑149 (MQ=255) ccACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATtcgtcg < 1:257355/149‑1 (MQ=255) cttctgctTCTGCGCCGAGAAGAAAGCCATGGGCCGCGACTACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCTACGACCGCATGGCAGTACTGTGGGATGCCTGGTTCAACAGCGGGCGTTTGTCGATGCACGATTTCGTagcgg < 2:251537/146‑2 (MQ=255) tgctTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGAc > 3:248203/1‑149 (MQ=255) ctTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACct > 5:322950/1‑149 (MQ=255) cTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACctct < 6:322950/148‑1 (MQ=255) gcgcCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATtcgt < 7:32868/133‑1 (MQ=255) gcgcCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATtcgt > 8:32868/1‑133 (MQ=255) | TCTACCGTGACCCGGACTGGACCACCGCCGCCGGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCT > NC_002947/4548509‑4548795 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |