Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,812,185 | A→G | 14.6% | intergenic (+105/‑288) | PP_4238 → / → PP_5665 | hypothetical protein/McbA family microcin B17‑like processing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,812,185 | 0 | A | G | 14.6% | 93.9 / 8.5 | 41 | intergenic (+105/‑288) | PP_4238/PP_5665 | hypothetical protein/McbA family microcin B17‑like processing protein |
Reads supporting (aligned to +/- strand): ref base A (17/18); new base G (4/2); total (21/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.63e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACATTGGTGATTGGACGCAGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCATTAT > NC_002947/4812039‑4812329 | acaTTGGTGATTGGACGCAGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCaaa > 4:319596/1‑148 (MQ=255) gATTGGACGCAGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCAt > 3:202485/1‑149 (MQ=255) cGCAGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTcgcg < 1:137663/149‑1 (MQ=255) gCAGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCgcgc > 8:12456/1‑149 (MQ=255) aGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTTTGACATCAGc < 1:279173/137‑1 (MQ=255) aGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTTTGACATCAGc > 2:279173/1‑137 (MQ=255) cGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAAc < 8:13563/148‑1 (MQ=255) cGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAAc < 6:286187/148‑1 (MQ=255) atcaatcTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGaa < 5:289793/149‑1 (MQ=255) tcACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATGTCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACaaa > 1:273219/1‑139 (MQ=255) tcACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCtta < 5:150505/112‑1 (MQ=255) tcACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCtta > 6:150505/1‑112 (MQ=255) tcACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACaaa < 2:273219/139‑1 (MQ=255) tcACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTcac < 3:319596/149‑1 (MQ=255) aCGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCacac < 4:202485/149‑1 (MQ=255) cGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACg > 2:251604/1‑149 (MQ=255) cGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTTTGACATCAGCa < 6:163989/89‑1 (MQ=39) cGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTTTGACATCAGCa > 5:163989/1‑89 (MQ=39) cGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTcac > 6:20751/1‑149 (MQ=255) aTCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCtt > 3:180435/1‑149 (MQ=255) taccACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTc < 5:293445/147‑1 (MQ=255) cccACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCATACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCg > 1:137632/1‑149 (MQ=255) aCGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCAc > 8:74637/1‑149 (MQ=255) tCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGaa > 2:212127/1‑149 (MQ=255) aCCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCATACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAg < 2:137632/149‑1 (MQ=255) tGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGc > 3:126242/1‑149 (MQ=255) cTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGcttctt < 5:20751/149‑1 (MQ=255) taaaaaTATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATAAGAATGCTCGCGCCCCTTATTAAAACTTCACACCGAGCATAACAAAGAACACTca > 6:87123/3‑103 (MQ=255) tCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTa < 7:12456/149‑1 (MQ=255) aaaaTATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACa > 6:247877/1‑149 (MQ=255) aaaaTATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACa > 5:66886/1‑149 (MQ=255) aaaaTATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCAAACCACAGAGATTTCGCACGCCAGAATCAGAAGCTTCTTAc > 1:117544/1‑148 (MQ=255) gAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTcacc < 4:240807/101‑1 (MQ=255) gAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATaa < 5:247877/148‑1 (MQ=255) gAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGATcacc > 3:240807/1‑101 (MQ=255) aTTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCTCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCAc < 1:251604/149‑1 (MQ=255) cATGCTGATGTTTGACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTaa > 1:181615/1‑148 (MQ=255) aTGCTGATGTTTGACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTaaa > 3:346451/1‑148 (MQ=255) aTGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCa < 4:126242/147‑1 (MQ=255) aTGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCa < 7:74637/147‑1 (MQ=255) aTGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCAt < 1:212127/148‑1 (MQ=255) tCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCATTAt > 2:283551/1‑148 (MQ=255) aaaCATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCATTAt > 6:146566/1‑146 (MQ=255) aaaCATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCATTAt > 8:182212/1‑146 (MQ=255) | ACATTGGTGATTGGACGCAGGCCGTTCTTTCGCAAGCAGTAAATCTCCCGAAATCAATCTCACGACCCGGCAAATCTATCCCCACGCAGGTCTAACCCTGCAACTCAAAATATCTAGAAACAATTCTTCGGAGCATGCTGATGTCAAACATCAGCATGCTCGCGCCCCTTATTAAAACTTCACACCGCGCATAACAAAGAACACTCACACGCTCACCACAGAGCTTTCGCACGCCAGAATCAGAAGCTTCTTACATAAATATAAGAAGCACTGAAAACTAAAAACCATTAT > NC_002947/4812039‑4812329 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |