Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,000,741 | G→A | 12.9% | intergenic (+211/‑1475) | PP_4407 → / → PP_4409 | gamma‑aminobutyrate transporter/site‑specific recombinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,000,741 | 0 | G | A | 12.9% | 132.9 / 9.7 | 54 | intergenic (+211/‑1475) | PP_4407/PP_4409 | gamma‑aminobutyrate transporter/site‑specific recombinase |
Reads supporting (aligned to +/- strand): ref base G (24/23); new base A (5/2); total (29/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.31e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.89e-01 |
AAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTGTAG > NC_002947/5000593‑5000880 | aaGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTg > 7:295031/1‑149 (MQ=255) aTGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGAc > 2:147146/1‑149 (MQ=255) gAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCt > 7:231591/1‑149 (MQ=255) gACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCCAGACTCCTGcg > 6:142529/1‑147 (MQ=255) aCGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCCAGACTCCTGCGGa < 5:142529/149‑1 (MQ=255) agaATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGc < 1:89698/149‑1 (MQ=255) tCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCAtct > 8:300311/1‑148 (MQ=255) gAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGc < 8:295031/149‑1 (MQ=255) cccTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGc > 5:149526/1‑135 (MQ=255) cccTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGc < 6:149526/135‑1 (MQ=255) ttATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCt > 5:300821/1‑149 (MQ=255) ttATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCt > 5:62720/1‑149 (MQ=255) tCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCtgt < 2:119171/148‑1 (MQ=255) ggggTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTg < 1:232597/98‑1 (MQ=255) ggggTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTg > 2:232597/1‑98 (MQ=255) ggTGCCTCCTGCCTGATCAAGGTTCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAAc < 1:147146/149‑1 (MQ=255) ggTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAAc < 8:231591/149‑1 (MQ=255) cctcctGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCt > 3:143080/1‑99 (MQ=255) cctcctGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCt < 4:143080/99‑1 (MQ=255) cctcctGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCt < 6:300821/149‑1 (MQ=255) ctcctGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTc < 7:300311/149‑1 (MQ=255) tcctGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTcc > 1:44641/1‑149 (MQ=255) tgATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCtt > 1:125441/1‑149 (MQ=255) gTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCt < 1:236359/149‑1 (MQ=255) gCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCATGCGCCGCTcc > 7:193029/1‑149 (MQ=255) aTGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGctc > 7:80891/1‑100 (MQ=255) aTGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGctc < 8:80891/100‑1 (MQ=255) tCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGTAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAAt > 6:142087/1‑149 (MQ=255) tCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTa < 3:168594/134‑1 (MQ=255) tCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTa > 4:168594/1‑134 (MQ=255) tCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTAc < 5:214584/144‑1 (MQ=255) tCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTAc > 6:214584/1‑144 (MQ=255) tGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATcc > 7:12807/1‑149 (MQ=255) gTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCGTTGCGCCGCTCCCTAGGTTCTGTACGaa < 2:93482/136‑1 (MQ=255) gTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGaa > 1:93482/1‑136 (MQ=255) gTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACt > 2:30777/1‑149 (MQ=255) gtaCTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGAc > 2:230665/1‑149 (MQ=255) cttcttCGTAGAGTTGTTTTCCGCGGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGcc > 4:70954/1‑149 (MQ=255) cttcttCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGcc > 5:16309/1‑149 (MQ=255) cttcGTAGAGTTGTTTTCCGTAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGcccc < 5:142087/148‑1 (MQ=255) gTAGAGTTGTTTTCCGCGGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCggg < 3:70954/149‑1 (MQ=255) gTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCggg < 2:44641/149‑1 (MQ=255) gTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCACAAGCTGCCAACTCAAGCCACTCCGTGCTCTCCCTGTGTTAACAGCACCCATCCTTGCGCCGCTCCCTAGGTTCTGGACGAAATCCCGAGAAACTCAATCCACGCCCCTCggg > 8:191315/1‑149 (MQ=255) ttttCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACg < 6:139312/131‑1 (MQ=255) ttttCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACg > 5:139312/1‑131 (MQ=255) ttttCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAAt < 5:246873/149‑1 (MQ=255) ctgCAGGAGTCCAGACTCCTGCGGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCgag > 8:307051/3‑113 (MQ=255) ccGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCt < 8:12807/148‑1 (MQ=255) tgCAGGAGTCCAGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTg > 6:19386/2‑148 (MQ=255) cGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTg > 7:111061/1‑148 (MQ=255) gCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCATGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTGTa < 8:193029/149‑1 (MQ=255) gCAGGAGTCCAGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTg > 1:24025/1‑147 (MQ=255) cAGGAGTGTGGAGTCCTGCAGAAGCTGCAAGCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCTTCCTTGCGCCGCTCCCTAGGTTCTGTACTAAATCCCGAGAAACTGACTCGACGCCCCTCGGGAGCTGAAATTCTGTAg < 6:62720/149‑1 (MQ=255) aGGAGTCCAGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTGTa < 8:292112/147‑1 (MQ=255) aGGAGTCCAGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTGTa > 7:292112/1‑147 (MQ=255) gAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGc < 2:359507/122‑1 (MQ=255) gAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGc > 1:359507/1‑122 (MQ=255) | AAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTTGCGCCGCTCCCTAGGTTCTGTACGAAATCCCGAGAAACTGAATCGACGCCCCTCGGGAGCTGAAATTCTGTAG > NC_002947/5000593‑5000880 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |