Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,028,905 | G→A | 6.5% | K391K (AAG→AAA) | PP_4432 → | Xaa‑Pro aminopeptidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,028,905 | 0 | G | A | 6.5% | 182.1 / 2.0 | 61 | K391K (AAG→AAA) | PP_4432 | Xaa‑Pro aminopeptidase |
Reads supporting (aligned to +/- strand): ref base G (29/28); new base A (2/2); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
CGAGCGACAACAGCGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGG > NC_002947/5028763‑5029052 | cGAGCGACAACAGCGTGCTCAAACCTGGTATTACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGATACGTTCTGCTCGACTCCTCGCAAGCTTTTc < 4:208148/149‑1 (MQ=255) cGAGCGACAACAGCGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTc < 7:265609/149‑1 (MQ=255) cGAGCGACAACAGCGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTc < 8:112425/149‑1 (MQ=255) gACAACAGCGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTttcttc > 6:366886/1‑147 (MQ=255) gACAACAGCGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTc > 3:272024/1‑147 (MQ=255) cGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGAc > 2:98201/1‑149 (MQ=255) gCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGa > 6:177844/1‑148 (MQ=255) aaaCCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGt > 2:274285/1‑149 (MQ=255) ccTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAg < 4:224537/135‑1 (MQ=255) ccACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGttt > 6:148878/1‑134 (MQ=255) ccACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGttt < 5:148878/134‑1 (MQ=255) ccACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCCACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAg < 1:274285/148‑1 (MQ=255) cACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGtt < 4:272024/149‑1 (MQ=255) cACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGAAACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTc < 1:251996/114‑1 (MQ=255) cACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGAAACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTc > 2:251996/1‑114 (MQ=255) aCTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTta > 2:109388/1‑149 (MQ=255) ttCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTtata > 1:243198/1‑149 (MQ=255) aTGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGt < 1:109388/148‑1 (MQ=255) tGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAACTTTTCGTCAGTCCTTGACGAAAAGCTT‑g < 7:195318/123‑1 (MQ=38) tGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAACTTTTCGTCAGTCCTTGACGAAAAGCTT‑g > 8:195318/1‑123 (MQ=38) ggatggatGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCtt > 6:272125/1‑149 (MQ=255) gatggatgATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCtt > 7:213449/1‑148 (MQ=255) atggatgATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCa < 2:243198/149‑1 (MQ=255) ggatgATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCt < 2:123727/120‑1 (MQ=255) gatgatTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGc < 8:295295/148‑1 (MQ=255) atTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACaa < 3:7547/149‑1 (MQ=255) cTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGAAGTTCTGCTCGACTACTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACTGCTATCTTCAGCGACAATGTGATgg > 4:328371/1‑149 (MQ=255) ttACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTCTCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCtt < 1:98201/149‑1 (MQ=255) agCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAAtgtg > 6:40133/1‑130 (MQ=255) agCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAAtgtg < 5:40133/130‑1 (MQ=255) tCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCAc < 5:272125/149‑1 (MQ=255) tGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTc > 4:165350/1‑148 (MQ=255) cACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGc > 3:129754/1‑148 (MQ=255) aCTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCa < 3:165350/149‑1 (MQ=255) aCTGATACTGGGGTCAAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCa > 6:207328/1‑149 (MQ=255) cTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCAc > 1:66855/1‑149 (MQ=255) aTACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTcc < 5:177844/149‑1 (MQ=255) cTGGGGTCGAGACGTTCTGCTCAACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCttt > 4:13210/1‑149 (MQ=255) tGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTg > 8:155663/1‑149 (MQ=255) tGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTg > 4:80978/1‑149 (MQ=255) cgTCGAGACGTTCTGCTCGACTCCTAGCAAGCTTTTCTTCAAGGACTGACGAAAAGTTT‑GCAAGTCTCTGGAGTTATAGTGCCACGGCTATCTTCACCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGtt < 3:273501/147‑1 (MQ=255) tcaagaCGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTa < 5:207328/146‑1 (MQ=255) gagaCGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTAc > 3:295460/1‑148 (MQ=255) gCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCAcc > 1:109293/1‑111 (MQ=255) gCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCAcc < 2:109293/111‑1 (MQ=255) cTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAAtgt > 1:334400/1‑91 (MQ=255) cTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAAtgt < 2:334400/91‑1 (MQ=255) cTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCAc < 8:213449/148‑1 (MQ=255) aCTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGc > 2:132992/1‑149 (MQ=255) tcctcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCt > 7:179656/1‑149 (MQ=255) cttgCAAACTTTTCGTCAGTCCTTGACGAAAAGCTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACaaaaaaa > 7:95270/4‑136 (MQ=38) cttgCAAACTTTTCGTCAGTCCTTGACGAAAAGCTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACaaaaaaa < 8:95270/133‑1 (MQ=38) ctcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCtt < 2:66855/148‑1 (MQ=255) tcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTcc < 3:319269/109‑1 (MQ=255) tcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTcc > 4:319269/1‑109 (MQ=255) gCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAg < 2:95465/71‑1 (MQ=255) gCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAg > 1:95465/1‑71 (MQ=255) gCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTg > 4:327636/1‑146 (MQ=255) aaGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAagag < 3:327636/149‑1 (MQ=255) aaGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAagag > 4:104632/1‑149 (MQ=255) aGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAgg < 3:13210/149‑1 (MQ=255) | CGAGCGACAACAGCGTGCTCAAACCTGGTATGACCTTCCACTTCATGCCTGGCCTATGGATGGATGATTGGGGGCTCGAGATTACCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTT‑GCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGG > NC_002947/5028763‑5029052 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |