Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,182,757 | C→G | 8.3% | Q83E (CAA→GAA) | PP_4562 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,182,757 | 0 | C | G | 8.3% | 180.3 / 6.5 | 61 | Q83E (CAA→GAA) | PP_4562 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (28/26); new base G (2/3); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 |
ACGCAACCTGTGGTGGTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTAAGGCCGTCAGGCTTT > NC_002947/5182612‑5182905 | acgcccccTGTGGTGGTTCGCAGGGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGTGAGCCTTGAGGaaa < 8:238260/143‑1 (MQ=255) cGCAACCTGTGGTGGTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAAt < 4:266762/149‑1 (MQ=255) ccTGTGGTGGTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGTGAGCCTTGAGGaaa > 1:179416/1‑143 (MQ=255) ccTGTGGTGGTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGTGAGCCTTGAGGaaa < 2:179416/143‑1 (MQ=255) tggtggTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTgcg < 4:172926/149‑1 (MQ=255) tggtggTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTg < 5:131757/147‑1 (MQ=255) cGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTg > 5:108687/1‑149 (MQ=255) aGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGc > 1:149780/1‑148 (MQ=255) tGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGTGAGCCTTGAGGaaa > 4:134550/1‑126 (MQ=255) tGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGTGAGCCTTGAGGaaa < 3:134550/126‑1 (MQ=255) gTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGcgccg > 3:138606/1‑149 (MQ=255) tGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGcgccgc < 1:178336/149‑1 (MQ=255) ctgctgGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTccac < 8:144107/149‑1 (MQ=255) tgctgGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTccac > 5:357662/1‑148 (MQ=255) ctgGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGCTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGACTGGCAAGCGCCGCTccacca > 8:1508/1‑148 (MQ=255) ggCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCa < 4:138606/148‑1 (MQ=255) gCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGTAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGc > 1:344296/1‑149 (MQ=255) cAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGcc > 4:53713/1‑149 (MQ=255) ccAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCt < 5:364165/144‑1 (MQ=255) ccAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCt > 6:364165/1‑144 (MQ=255) ccAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGccc > 4:285064/1‑149 (MQ=255) gACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAAt < 5:208021/95‑1 (MQ=255) gACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAAt > 6:208021/1‑95 (MQ=255) cTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCg < 3:285064/149‑1 (MQ=255) tCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAGGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCgg > 3:114772/1‑149 (MQ=255) tCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCgg > 4:33877/1‑149 (MQ=255) aaCCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGa < 3:33877/149‑1 (MQ=255) aCCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGAc < 5:364867/149‑1 (MQ=255) ctgctgctgCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATgg < 2:246285/85‑1 (MQ=255) ctgctgctgCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATgg > 1:246285/1‑85 (MQ=255) gcACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCtgctgc > 5:90426/1‑149 (MQ=255) cacaCGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCg > 6:70406/1‑134 (MQ=255) cacaCGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCg < 5:70406/134‑1 (MQ=255) gAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCg > 3:255204/1‑149 (MQ=255) tGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTg > 1:180527/1‑149 (MQ=255) aGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGTCTCGCTGCTGCGCGACACCCGTCCGGGTGGc < 7:1508/149‑1 (MQ=255) gcagcaCCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTg < 8:196440/68‑1 (MQ=255) gcagcaCCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTg > 7:196440/1‑68 (MQ=255) cagcaCCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGGACGGGTGTCGcgca < 3:53713/149‑1 (MQ=255) gCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGAc < 6:257434/142‑1 (MQ=255) gCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGAc > 5:257434/1‑142 (MQ=255) gCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTcc < 1:86999/146‑1 (MQ=255) gCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTcc > 2:86999/1‑146 (MQ=255) gCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGc > 6:265566/1‑148 (MQ=255) ccaccaATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAAc > 2:300612/1‑149 (MQ=255) caccaATTTCCTCAGGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACt < 4:114772/149‑1 (MQ=255) caccaATTTCCTCAAGGCTCAGCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCACCt > 3:348475/1‑149 (MQ=255) caccaATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACt > 7:63368/1‑149 (MQ=255) caccaATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACt > 6:70185/1‑149 (MQ=255) caccaATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACt > 3:233625/1‑149 (MQ=255) ccaATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTc > 4:284942/1‑149 (MQ=255) cTCAAGGCTCACCTTGAGTAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGc < 2:344296/149‑1 (MQ=255) cTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACa < 8:309985/146‑1 (MQ=255) cTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACa > 7:309985/1‑146 (MQ=255) cTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGc < 2:180527/149‑1 (MQ=255) cggCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCACGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTaa < 4:255204/148‑1 (MQ=255) ggCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTAAg < 6:90426/149‑1 (MQ=255) aCCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGa < 6:56951/118‑1 (MQ=255) aCCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGa > 5:56951/1‑118 (MQ=255) gAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTAAGGCCGTCAgg < 5:70185/148‑1 (MQ=255) gAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTAAGGCCGTCAg < 3:284942/147‑1 (MQ=255) cAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTAAGGCCGTCAGGCttt > 3:137023/1‑149 (MQ=255) | ACGCAACCTGTGGTGGTTCGAAGTGCCGGTGGCACTGCTGGGCAAGGGCCAGGCCGACTGGGTCAACCTGCTGCTGCACACGCCGGAAAGCGATGAGCTGCAGCACCTGAAGGTGCCCACCAATTTCCTCAAGGCTCACCTTGAGCAAATGGAAGTGCGCAAGCCTGGCAAGCGCCGCTCCACCATCAGCCTGGCCCTCAGCGCCGACCGGGACTCGCTGCTGCGCGACACCCGTCCGGGTGGCGAGCAGCTGGACTTCCGCAACTTCGTACAGGCGTAAGGCCGTCAGGCTTT > NC_002947/5182612‑5182905 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |