Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 355,218 | C→A | 17.3% | intergenic (‑47/+38) | cbcW ← / ← cbcX | choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 355,218 | 0 | C | A | 17.3% | 122.4 / 20.3 | 52 | intergenic (‑47/+38) | cbcW/cbcX | choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (22/21); new base A (4/5); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.31e-01 |
TCGAAGTAATTCGCGCCGTTCTGGGTCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGATCCATTTCTT > NC_002947/355086‑355366 | tCGAAGTAATTCGCGCCGTTCTGGGTCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGACCGTGCCTGCCCCggg < 5:329703/149‑3 (MQ=255) gTAATTCGCGCCGTTCTGGGTCAGCCATTCGACGAACGACGCGGATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAg > 1:249659/1‑149 (MQ=255) ttCTGGGTCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGt > 7:277827/1‑149 (MQ=255) ggTCACCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCg < 3:305245/147‑1 (MQ=255) gTCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTa > 1:321807/1‑149 (MQ=255) gTCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTa > 8:154381/1‑149 (MQ=255) tCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGACCGTGCCTGCCCCg < 1:147633/122‑1 (MQ=255) tCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGACCGTGCCTGCCCCg < 1:47830/122‑1 (MQ=255) tCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGACCGTGCCTGCCCCg > 2:147633/1‑122 (MQ=255) tCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGACCGTGCCTGCCCCg > 2:47830/1‑122 (MQ=255) aGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTg > 8:218763/1‑149 (MQ=255) gCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTTGTTCGTTATTGc < 7:150264/149‑1 (MQ=255) ccATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTAtt < 5:132499/146‑1 (MQ=255) aTTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGt > 7:208844/1‑148 (MQ=255) aTTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGt > 2:107121/1‑148 (MQ=255) gacgaACGCCGC‑GATGTACAGGACCAGGGGAAGTTTCTGAACGATAAGAATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCAGGGCAGGCACGGTCCTGCACCTAGGTAGCGCTACTCCGTAGATAGTTAATGCGTATGCt > 8:155488/1‑149 (MQ=255) acgacgC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAACGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGcc > 6:296227/1‑149 (MQ=255) gacgC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCTGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCtt < 8:177344/149‑1 (MQ=255) tGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTccag > 3:104080/1‑149 (MQ=255) cAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTccaggc‑cag > 5:45442/1‑149 (MQ=255) ggggTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCcaggc‑caggc < 3:226195/149‑1 (MQ=255) gTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTg > 6:9765/1‑149 (MQ=255) tATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGc < 7:154381/149‑1 (MQ=255) aTTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTccaggc‑cag > 2:252568/1‑142 (MQ=255) aTTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCCTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTccaggc‑cag < 1:252568/142‑1 (MQ=255) ttttCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGcc > 8:161844/1‑148 (MQ=255) tttCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTcc > 5:178225/1‑133 (MQ=255) tttCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTcc < 6:178225/133‑1 (MQ=255) tGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAAc > 2:287162/1‑149 (MQ=255) aTCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCaa < 2:249659/146‑1 (MQ=255) gATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACggtg < 2:321807/148‑1 (MQ=255) aTAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACggtggt < 5:9765/149‑1 (MQ=255) aTAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACggtgg > 6:294227/1‑148 (MQ=255) tGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCg < 5:294227/149‑1 (MQ=255) cGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCTCGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGgccagc > 5:204294/1‑149 (MQ=255) gAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCCTAGTTCCTTATTGCGTAAGCTTGGCCTAGACCGCCTCCAGGC‑CACGCTTGCCATCAACGGTGGTAACGCCGgccagc > 2:4268/1‑148 (MQ=255) aGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGgccagcca < 4:104080/149‑1 (MQ=255) aGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGgccagcca < 6:45442/149‑1 (MQ=255) cATAGATTGAAATCAACCCGGGGCCGGCACGGTCCTGCCCCGAGGTAGGGCTTCTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACggtg < 8:306166/120‑1 (MQ=255) aTTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGc > 8:16722/1‑142 (MQ=255) aTTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGc < 7:16722/142‑1 (MQ=255) gAAATCAACCCGGGGCAGGCTCGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTggg < 6:204294/148‑1 (MQ=255) aaaTCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGtt > 1:108063/1‑149 (MQ=255) caCCCGGTGCAGGCAGGGTCGTTCCCCGAGGTAGCGCTACTGGGTAGTTCGTTTTTGCGTAAGCTTGGCCGTGACCGCCTCCCGGC‑CAGGCTTGGGATGAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGtgc < 7:155488/147‑3 (MQ=255) aaCCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCt < 7:161844/149‑1 (MQ=255) ctcGGGGCAGGACCGTGCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTgg > 4:236551/3‑139 (MQ=255) ctcGGGGCAGGACCGTGCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTgg < 3:236551/137‑1 (MQ=255) cccGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCtt > 5:30601/1‑148 (MQ=255) cGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGCTCAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGa < 1:107121/149‑1 (MQ=255) ggggCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGATc < 8:208844/149‑1 (MQ=255) gggCAGGACCGTGCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTcc > 6:56683/1‑142 (MQ=255) gggCAGGACCGTGCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTcc < 5:56683/142‑1 (MQ=255) aggcaCGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTTCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCAACAAGCTTGCCTGGGTTTTCCTTGATCCaat > 7:50115/1‑146 (MQ=255) aggcaCGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGATCCAttt > 1:43217/1‑149 (MQ=255) gcaCGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGATCCATTTCt > 4:248819/1‑149 (MQ=255) caCGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGATCCATTTCtt > 1:145193/1‑149 (MQ=255) | TCGAAGTAATTCGCGCCGTTCTGGGTCAGCCATTCGACGAACGACGC‑GATGTACTGGCCCAGGGGTATTTTCTGATCGATAAGCATGATAGCGAGCTTCCACCTGCATAGATTGAAATCAACCCGGGGCAGGCACGGTCCTGCCCCGAGGTAGCGCTACTGCGTAGTTCGTTATTGCGTAAGCTTGGCCTTGACCGCCTCCAGGC‑CAGGCTTGCCATCAACGGTGGTAACGCCGGCCAGCCAGGCATCCAGCTTGCCTGGGTTGTCCTTGATCCATTTCTT > NC_002947/355086‑355366 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |