Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,532,750 C→T 9.5% G145D (GGC→GAC)  braD ← high‑affinity branched‑chain amino acid ABC transporter permease BraD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,532,7500CT 9.5% 175.0 / 5.9 63G145D (GGC→GAC) braDhigh‑affinity branched‑chain amino acid ABC transporter permease BraD
Reads supporting (aligned to +/- strand):  ref base C (27/30);  new base T (3/3);  total (30/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCAGGATCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTAC  >  NC_002947/5532603‑5532894
                                                                                                                                                   |                                                                                                                                                
cccAGGATCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGcc                                                                                                                                                 <  1:67708/149‑1 (MQ=255)
      aTCGAGGCCATCTTGCGGTCTTGCGGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGAccc                                                                                                                                           <  4:148726/149‑1 (MQ=255)
       tCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGAccc                                                                                                                                           >  1:99447/1‑148 (MQ=255)
          aGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACt                                                                                                                                       >  2:10654/1‑149 (MQ=255)
           ggCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACtt                                                                                                                                      <  7:311230/149‑1 (MQ=255)
                      ggTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATg                                                                                                                           <  7:64360/149‑1 (MQ=255)
                       gTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATgg                                                                                                                          >  5:33565/1‑149 (MQ=255)
                          atGCTGGGTAGCACGGCACATGAGGCCGAGATTGCTGTACTTGATCACCTAGGTCAGCAGGACCATGCCGAGAAAGGCCGCCACCAGGATCAAGATCATGCTATAAGTCTGTTGAACGAAGCCGCACCCAACGTGGCCACCCATGgcgc                                                                                                                       >  8:335641/2‑149 (MQ=255)
                            gCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCTGACCCGACTTCGACACGCATGGCGcc                                                                                                                      <  6:294046/148‑1 (MQ=255)
                            gCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGcc                                                                                                                      <  6:125913/148‑1 (MQ=255)
                                 gTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGTCGGACCCGACTTCGACACGCATGGCGCCTTc                                                                                                                   >  6:293781/1‑146 (MQ=255)
                                      aCGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAggg                                                                                                           >  1:288731/1‑149 (MQ=255)
                                        ggCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCcagca                                                                                                              <  8:44010/144‑1 (MQ=255)
                                        ggCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCcagca                                                                                                              >  7:44010/1‑144 (MQ=255)
                                        ggCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGtt                                                                                                         <  8:206531/149‑1 (MQ=255)
                                        ggCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGtt                                                                                                         >  5:65488/1‑149 (MQ=255)
                                         gCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTg                                                                                                        <  2:99447/149‑1 (MQ=255)
                                          cacaTGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTgg                                                                                                       >  6:26462/1‑149 (MQ=255)
                                             aTGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCAc                                                                                                    >  6:113253/1‑149 (MQ=255)
                                                           ggTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGGCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTggcgg                                                                                       <  5:85065/148‑1 (MQ=255)
                                                               tACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGcc                                                                                  <  6:49021/149‑1 (MQ=255)
                                                                    gATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGc                                                                             >  7:209966/1‑149 (MQ=255)
                                                                     aTCACGTAGGTCAGGAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGc                                                                             <  7:335641/148‑1 (MQ=255)
                                                                     aTCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGc                                                                             <  6:181938/148‑1 (MQ=255)
                                                                        aCGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGAt                                                                         <  4:326553/149‑1 (MQ=255)
                                                                             ggTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCtgt                                                                     <  5:26462/148‑1 (MQ=255)
                                                                              gTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGc                                                                   >  2:77989/1‑149 (MQ=255)
                                                                                 agcagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCtgt                                                                     <  5:332032/144‑1 (MQ=255)
                                                                                 agcagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCtgt                                                                     >  6:332032/1‑144 (MQ=255)
                                                                                 agcagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCg                                                                  >  1:11587/1‑147 (MQ=255)
                                                                                  gcagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTc                                                                                                                   <  2:261409/97‑1 (MQ=255)
                                                                                  gcagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTc                                                                                                                   >  1:261409/1‑97 (MQ=255)
                                                                                   cagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGt                                                              >  6:328291/1‑149 (MQ=255)
                                                                                             ccGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAg                                                       >  7:148488/1‑146 (MQ=255)
                                                                                             ccGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAg                                                       <  8:148488/146‑1 (MQ=255)
                                                                                               gACAAAGGCCGCCACCAGGATGAAAATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGAt                                                    >  7:223376/1‑147 (MQ=255)
                                                                                                aCAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGc                                                                                             <  8:81565/105‑1 (MQ=255)
                                                                                                aCAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGc                                                                                             >  7:81565/1‑105 (MQ=255)
                                                                                                  aaaGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGc                                                >  5:197017/1‑148 (MQ=255)
                                                                                                    aGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGa                                              >  6:248375/1‑148 (MQ=255)
                                                                                                    aGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCCGTGCGTAGTTCTGCAGGATCAGCGaa                                             <  1:10654/149‑1 (MQ=255)
                                                                                                        cgccACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGc                                         <  1:77989/149‑1 (MQ=255)
                                                                                                            accaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGAt                                     <  8:209966/149‑1 (MQ=255)
                                                                                                            accaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGAt                                     <  6:33565/149‑1 (MQ=255)
                                                                                                             ccaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGTCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATg                                    >  3:52200/1‑149 (MQ=255)
                                                                                                             ccaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGAt                                                                         <  6:207412/112‑1 (MQ=255)
                                                                                                             ccaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGAt                                                                         >  5:207412/1‑112 (MQ=255)
                                                                                                                ggATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCa                                 <  6:197017/149‑1 (MQ=255)
                                                                                                                     aaGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGAt                            <  6:65488/149‑1 (MQ=255)
                                                                                                                             ggTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGTCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGc                        <  4:52200/145‑1 (MQ=255)
                                                                                                                              gTATAAGTCAGTTGCACGAAGTCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTg                    <  5:293781/148‑1 (MQ=255)
                                                                                                                               tataAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGa                             <  5:165961/138‑1 (MQ=255)
                                                                                                                               tataAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGa                             >  6:165961/1‑138 (MQ=255)
                                                                                                                               tataAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGc                   >  1:246439/1‑148 (MQ=255)
                                                                                                                                     tCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCgg            <  2:11587/149‑1 (MQ=255)
                                                                                                                                        gTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTg         >  5:269060/1‑149 (MQ=255)
                                                                                                                                            cACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATgg                                   >  2:160567/1‑119 (MQ=255)
                                                                                                                                            cACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATgg                                   <  1:160567/119‑1 (MQ=255)
                                                                                                                                            cACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAg      <  5:113253/148‑1 (MQ=255)
                                                                                                                                            cACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGCGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGt     >  6:7759/1‑149 (MQ=255)
                                                                                                                                             tcGAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGt          >  8:143677/2‑143 (MQ=255)
                                                                                                                                             tcGAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGt          <  7:143677/142‑1 (MQ=255)
                                                                                                                                             tcGAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGt     >  7:299609/2‑148 (MQ=255)
                                                                                                                                               gAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTAc  <  8:299609/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
CCCAGGATCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTAC  >  NC_002947/5532603‑5532894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: