| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,707,114 | G→A | 6.4% | G378S (GGC→AGC) | PP_5009 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,707,114 | 0 | G | A | 6.4% | 186.5 / 2.0 | 62 | G378S (GGC→AGC) | PP_5009 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (33/25); new base A (2/2); total (35/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
GACCTGCCTTCGCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGCACACAAGGGCA > NC_002947/5706967‑5707259 | gtccTGCCTTCGCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTggg < 5:36441/147‑1 (MQ=255) aCCTGCCTTCGCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGc > 4:226907/1‑149 (MQ=255) gCCTTCGCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATg > 2:263032/1‑149 (MQ=255) ttCGCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTc > 3:328356/1‑148 (MQ=255) gCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCCCAGCGATGtgcag < 4:134858/148‑5 (MQ=255) ggAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGATGata < 8:239630/149‑1 (MQ=255) gaacgaacTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGatat > 4:37107/1‑149 (MQ=255) gaacgaacTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGatat > 4:155971/1‑149 (MQ=255) cgaacTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGAt < 8:80522/135‑1 (MQ=255) cgaacTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGAt > 7:80522/1‑135 (MQ=255) aacTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTg < 6:221762/149‑1 (MQ=255) cgcCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGACCCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTAc > 5:249460/1‑149 (MQ=255) tCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTAcgccgctcgc > 5:242696/1‑149 (MQ=255) ccACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGaa > 4:5984/1‑120 (MQ=255) ccACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGaa < 3:5984/120‑1 (MQ=255) cACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCg > 1:190598/1‑111 (MQ=255) cACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCg < 2:190598/111‑1 (MQ=255) cACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCg > 1:196280/1‑111 (MQ=255) cACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCg < 2:196280/111‑1 (MQ=255) cACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGaa > 5:176294/1‑119 (MQ=255) cACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGaa < 6:176294/119‑1 (MQ=255) cgcgATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGt < 4:328356/149‑1 (MQ=255) gATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTgag > 1:216278/1‑149 (MQ=255) aTGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTgaga < 3:155971/149‑1 (MQ=255) ctCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTg < 3:226907/147‑1 (MQ=255) cAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGaa < 8:60435/103‑1 (MQ=255) cAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGaa > 7:60435/1‑103 (MQ=255) aaTGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGGCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGa > 3:110546/1‑148 (MQ=255) cAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTg > 5:79222/1‑139 (MQ=255) cAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTg < 6:79222/139‑1 (MQ=255) cTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATc > 1:246385/1‑147 (MQ=255) tGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATc > 3:181695/1‑146 (MQ=255) gCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCa < 1:263032/149‑1 (MQ=255) gCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCa < 6:242696/149‑1 (MQ=255) gCCTATCACTCGGCACTGATCGATGTGGCGGCTAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAATATATCCGTGATTACGCCGCTCGCCGCTTGCGt < 1:285183/111‑1 (MQ=255) gCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGt > 1:350169/1‑146 (MQ=255) gCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGt < 2:350169/146‑1 (MQ=255) cacGGCACTGCTCGATCTGGCGGAGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTac > 4:126461/1‑140 (MQ=255) cacGGCACTGCTCGATCTGGCGGAGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTac < 3:126461/140‑1 (MQ=255) ggcgAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAgg < 6:67079/113‑1 (MQ=255) ggcgAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAgg > 5:67079/1‑113 (MQ=255) ggcgAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCAttt > 4:1889/1‑149 (MQ=255) ggcgAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCAttt > 2:271779/1‑149 (MQ=255) aCCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTAGCCGCTTGCGTGAGACCCTGCCGACCAGCTATACAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCaa > 5:177635/1‑149 (MQ=255) aaGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCa < 1:174452/90‑1 (MQ=255) aaGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCa > 2:174452/1‑90 (MQ=255) aaGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCaa > 7:17713/1‑146 (MQ=255) aaGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCaa < 8:17713/146‑1 (MQ=255) aGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCca < 4:181695/149‑1 (MQ=255) gtcgAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTg > 2:191329/1‑76 (MQ=255) gtcgAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCg > 3:339680/1‑149 (MQ=255) aaGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGgcgc > 6:225924/1‑149 (MQ=255) cTGTACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGca > 3:330430/1‑149 (MQ=255) tGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGca > 2:271955/1‑148 (MQ=255) gacaTCGCCCAGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGTCGCCGGcaca > 7:304628/2‑148 (MQ=255) acaTCGCCCAGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGc < 7:318031/128‑1 (MQ=255) acaTCGCCCAGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGc > 8:318031/1‑128 (MQ=255) caTCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACGCTGCAGACCTGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGCACACaa < 2:246385/149‑1 (MQ=255) aTCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCATCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCaa < 5:244077/124‑1 (MQ=255) aTCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCaa > 6:244077/1‑124 (MQ=255) aTCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGAGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGCACACAAg > 4:61332/1‑149 (MQ=255) tCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGCACACAAgg < 2:216278/149‑1 (MQ=255) cTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGCACACAAGGGCa < 5:225924/149‑1 (MQ=255) | GACCTGCCTTCGCAGGAACGAACTGCGCCCGCTGTCAGCCCACCGCGATGGCTGCTCAATGCCAGCGCTGAGGACCGCTACGCCTATCACACGGCACTGCTCGATCTGGCGGCGAACCAAGGTCGGTCGAAGGGCTGCACATCGCTGGGCGATGTCGAAGATATCCGTGATTACGCCGCTCGCCGCTTGCGTGAGACCCTGCAGACCAGCTATCCAGACAAGGCAGTACACGACCCGAACGATGTGCACATCCGCATTTCCCAAGCCATCATCGGCGCCGGCACACAAGGGCA > NC_002947/5706967‑5707259 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |