Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,785,967 | T→A | 6.4% | L324Q (CTG→CAG) | PP_5068 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,785,967 | 0 | T | A | 6.4% | 187.7 / 2.6 | 62 | L324Q (CTG→CAG) | PP_5068 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (29/29); new base A (2/2); total (31/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 |
CTTCATCTGCAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTGGACTACAGCCTGTTCTTCCGCAAAC > NC_002947/5785821‑5786113 | cTTCATCTGCAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGc > 7:269541/1‑149 (MQ=255) aTCTGCAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGc < 6:34762/148‑1 (MQ=255) gCAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTAc > 2:4891/1‑149 (MQ=255) cAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTg < 8:269541/145‑1 (MQ=255) cAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTa < 2:30499/147‑1 (MQ=255) cACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGc < 6:120726/149‑1 (MQ=255) cgacgaCCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGGTACAGCGGCAGGAACAGGCCCaac < 4:195591/149‑3 (MQ=255) cAGCTACGCCAACCCTGTGCCCATCGCCCACTGTCACCTCAGCGCGCTGGCCCAGGAACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATgcgc < 5:293472/148‑1 (MQ=255) aGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCg > 3:134368/1‑149 (MQ=255) tACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGgcg > 8:108099/1‑149 (MQ=255) tACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGgcg > 1:159101/1‑149 (MQ=255) cGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCg < 4:156693/109‑1 (MQ=255) cGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCg > 3:156693/1‑109 (MQ=255) cGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGgcgc > 4:9720/1‑148 (MQ=255) gCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTTGGCCTGTTCCTGCCGCTGTAACAGGCCCATTACCTGGACCTGATGCGACGgcgca > 6:244348/1‑147 (MQ=255) gCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGa > 2:126027/1‑131 (MQ=255) gCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGa < 1:126027/131‑1 (MQ=255) cAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGGTACAGCGGCAGGAACAGGCCCaa < 6:263299/121‑2 (MQ=38) cAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGGTACAGCGGCAGGAACAGGCCCaa > 5:263299/1‑120 (MQ=38) cAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCt < 4:134368/149‑1 (MQ=255) aGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCt > 2:165251/1‑121 (MQ=255) aGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCt < 1:165251/121‑1 (MQ=255) ggTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGa < 1:4891/149‑1 (MQ=255) cATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTg > 2:155112/1‑142 (MQ=255) cATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTg < 1:155112/142‑1 (MQ=255) tCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTa < 2:148964/109‑1 (MQ=255) tCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTa > 1:148964/1‑109 (MQ=255) tCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCAccgc > 7:115976/1‑148 (MQ=255) tCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCAccgc < 8:115976/148‑1 (MQ=255) cGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCAGCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAggg < 4:67698/136‑1 (MQ=255) cGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAggg > 3:67698/1‑136 (MQ=255) gCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGc > 3:94231/1‑88 (MQ=255) gCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGc < 4:94231/88‑1 (MQ=255) cccACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGaa > 1:344833/1‑149 (MQ=255) tGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATgc < 3:98220/115‑1 (MQ=255) tGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATgc > 4:98220/1‑115 (MQ=255) ccTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTAcc < 2:139433/98‑1 (MQ=255) ccTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTAcc > 1:139433/1‑98 (MQ=255) ccTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACa > 3:344653/1‑149 (MQ=255) cTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑tgatga > 2:217648/1‑146 (MQ=255) cTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑tgatga < 1:217648/146‑1 (MQ=255) cAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATgg > 5:280011/1‑149 (MQ=255) cgcgcTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGc < 7:108099/149‑1 (MQ=255) cgcTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTg < 6:280011/149‑1 (MQ=255) gCCCCGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGa < 4:346855/149‑1 (MQ=255) ccAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAgc < 3:9720/149‑1 (MQ=255) aGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGAc < 2:222101/86‑1 (MQ=255) aGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGAc > 1:222101/1‑86 (MQ=255) cACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCctg < 4:344653/149‑1 (MQ=255) caccGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTg > 7:201756/1‑100 (MQ=255) caccGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTg < 8:201756/100‑1 (MQ=255) caccGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGt < 2:159101/149‑1 (MQ=255) caccGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGCGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCAGACAACCGCCGAA‑‑GA‑TGATGACATGGTGCTTGTCGTGCGGCTGCTGCAGt > 6:203901/1‑149 (MQ=255) ccGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCTAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGtgc < 5:244348/149‑1 (MQ=255) tGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGtgcatg > 3:92324/1‑149 (MQ=255) gAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAAcg > 6:89036/1‑149 (MQ=255) gAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAAATAAGTGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGAgg > 1:294156/1‑149 (MQ=255) cccatcgaagCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTg < 1:305358/141‑1 (MQ=255) cTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTGGa > 7:219081/1‑149 (MQ=255) aggtaatGGGCCTGGTACAGCGGCAGGAACAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTGGACTACAGc > 7:145827/7‑149 (MQ=38) cGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTGGACTACAGCCTg < 5:89036/149‑1 (MQ=255) ccTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTGGACTACAGCCTGTTCTTCCGCAAAc > 5:107847/1‑149 (MQ=255) | CTTCATCTGCAACCACTCCGACGACCGTGGCCGCTACAGCTACGCCAACCAGGTGCCCATCGCCCACTGGAACCTCAGCGCGCTGGCCCAGGCACTGACCACCGTGATCGAAGTTGAGCCACTGAAGGAAGCGTTGGGCCTGTTCCTGCCGCTGTACCAGGCCCATTACCTGGACCTGATGCGCCGGCGCCTAGGGCTGACCACCGCCGAA‑‑GA‑TGATGACATGGTGCTGGTCGAGCGCCTGCTGCAGTGCATGCAACGCGGTGGCGTGGACTACAGCCTGTTCTTCCGCAAAC > NC_002947/5785821‑5786113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |