Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,810,351 | T→A | 9.5% | D81V (GAC→GTC) ‡ | rpmE ← | 50S ribosomal protein L31 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,810,351 | 0 | T | A | 9.5% | 113.5 / 3.0 | 42 | D81V (GAC→GTC) ‡ | rpmE | 50S ribosomal protein L31 |
Reads supporting (aligned to +/- strand): ref base T (20/18); new base A (2/2); total (22/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 |
GCCCACAAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAACTACTTCGTAGTTCGGGTGGATA > NC_002947/5810213‑5810494 | gCCCACAAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACttt > 5:243465/1‑149 (MQ=255) gCCCACAAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACttt < 3:160245/149‑1 (MQ=255) ccACAAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCt > 8:139323/1‑149 (MQ=255) cacaAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTg > 2:226596/1‑149 (MQ=255) acaAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGc > 7:14764/1‑149 (MQ=255) acaAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTAAGCAGAAAGTTCTg > 1:182371/1‑148 (MQ=255) aaGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCg < 1:226596/149‑1 (MQ=255) ccACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTAAGCAGAAAGTTCTGGACACCGgtggtcg < 2:182371/149‑5 (MQ=38) acaAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAAc < 8:14764/149‑1 (MQ=255) caAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACg < 6:188249/149‑1 (MQ=255) tgggcGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACggg < 3:255406/144‑1 (MQ=255) gACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTgg < 6:48694/149‑1 (MQ=255) aCGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTgg > 8:71616/1‑148 (MQ=255) gCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGca > 5:326980/1‑148 (MQ=255) tcAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTg > 7:296681/1‑148 (MQ=255) cAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGtt < 6:243465/146‑1 (MQ=255) caacaaTGCGAAACCCGAAGGATTCGCCATGCGAATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAAc < 7:139323/149‑1 (MQ=255) acaaTGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTATTGGCACAGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACAACAGGTGTACAGCACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGAAAACg > 7:335060/1‑148 (MQ=255) gAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACg > 2:227794/1‑149 (MQ=255) gCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCAAAGGTTGCAAACGtc > 3:53931/1‑127 (MQ=255) cgcATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGaa < 6:326980/149‑1 (MQ=255) aTGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAAc > 5:24916/1‑147 (MQ=255) gATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACTCGTTGCACACGTTCAAAAATTATATCAAAAGGAAGTTGCCCAGGGTCGAACGAGt > 8:153857/1‑149 (MQ=255) aTTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGtt < 3:89575/149‑1 (MQ=255) aCTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTc < 8:296681/148‑1 (MQ=255) ttcttGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGaa > 2:85428/1‑149 (MQ=255) ggCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACtt < 7:71616/147‑1 (MQ=255) gCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCa > 2:287466/1‑124 (MQ=255) gCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCa < 1:287466/124‑1 (MQ=255) cACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTa < 1:227794/149‑1 (MQ=255) cACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTa > 2:46710/1‑149 (MQ=255) cGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCg > 5:300592/1‑149 (MQ=255) cGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTTTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAg < 7:153857/149‑1 (MQ=255) cGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGc < 6:24916/148‑1 (MQ=255) gCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAac > 7:38240/1‑149 (MQ=255) tGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGATCTAGTTGCACACGTTGAAAAAATCTATCTACAGGAAGTTGCCCAGGGTAGAACGAGATTCGAACTTGATACAGCAGCTGCAGGTGACTGCAACTACTTCTTa > 4:69571/1‑149 (MQ=255) cgcgACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAACTACTTCGTAGTTc < 1:46710/149‑1 (MQ=255) gcgACAACCGGTGTCAAGAACTTTCTGCTTACCGGTGTAGAACGGTTGGCACACGTTGAAAACATCTATCGACAGGACGTTCACCAGGGTAGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTTAATGAAACTACTTCGTAGtaag > 8:230035/1‑146 (MQ=255) accaccGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAACTACTTCGTAGTTCGGGt < 3:97657/149‑1 (MQ=255) acaccGGTAAGCAGAAAGTTCTGGACACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAac > 1:132643/2‑131 (MQ=38) acaccGGTAAGCAGAAAGTTCTGGACACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAac < 2:132643/130‑1 (MQ=38) cGGTGTCCAGAACTTTCTGCTTACCGGTGTGGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAACTACTTCGTAGTTCGGGTGGATa > 8:337271/1‑149 (MQ=255) | GCCCACAAAAAAGGCGCCCACAAGGGACGCCTTCTTCAGCAACAATGCGAAACCCGAAGGATTCGCCATGCGCATGATTACTTCTTGGCACCGAACATGCCGAAGCGATCGGCGAACTTCTGTACGCGACCACCGGTGTCCAGAACTTTCTGCTTACCGGTGTAGAACGGGTGGCACAGGTTGCAAACGTCGATCGACAGGACGTTGCCCAGGGTCGAACGAGTTTCGAACTTGTTACCGCAGCTGCAGGTGACTGCAACTACTTCGTAGTTCGGGTGGATA > NC_002947/5810213‑5810494 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |