| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,981,883 | G→T | 5.6% | W843L (TGG→TTG) | PP_5242 → | GAF domain‑containing sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,981,883 | 0 | G | T | 5.6% | 227.4 / 2.0 | 70 | W843L (TGG→TTG) | PP_5242 | GAF domain‑containing sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base G (34/32); new base T (2/2); total (36/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 | |||||||||||
CAGCGTGCTCGCTCGGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCCTTCTTC > NC_002947/5981735‑5982028 | cAGCGTGCTCGCTCGGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTg > 1:248372/1‑149 (MQ=255) tcgctcgGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGgcagca < 6:276896/147‑1 (MQ=255) tcgctcgGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGgcagca > 5:276896/1‑147 (MQ=255) gctcgGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAgg < 2:248372/147‑1 (MQ=255) gctcgGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTc > 6:339449/1‑149 (MQ=255) gctcgGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTc > 2:197554/1‑149 (MQ=255) ggTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAgg < 8:267261/143‑1 (MQ=255) ggTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAgg > 7:267261/1‑143 (MQ=255) ggTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACCTGCTGCCAGTCGAg < 6:137641/148‑1 (MQ=255) gtgtTGGACCAGGCACCGGCGTGCCGGCTGCAGGAGCTGCTGTACACCTTGCCCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCAGGCCTTACGGGGTATCAGCCCTGTGCGGGGCATCGACTGCCAGCAGGTCGAgcc > 4:47725/1‑147 (MQ=255) gACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCa > 8:154844/1‑149 (MQ=255) cAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGc < 5:241233/149‑1 (MQ=255) ggCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGccc < 5:339449/149‑1 (MQ=255) gCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAg > 6:196675/1‑135 (MQ=255) gCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAg < 5:196675/135‑1 (MQ=255) gCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCa > 7:219107/1‑149 (MQ=255) gCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCAtgtg > 2:1509/1‑147 (MQ=255) tGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCGCATGTGCAGGc < 8:219107/149‑1 (MQ=255) ccGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGt > 1:45919/1‑149 (MQ=255) ccGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACCTGCTGCCAGTCGAGGc > 8:125870/1‑126 (MQ=255) ccGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACCTGCTGCCAGTCGAGGc < 7:125870/126‑1 (MQ=255) ggCTGGAGGCGCTGCTGTACACCTTGCGCGGTGACTATCTGGGGGGCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGGCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGGAAGTGATGCCCATGTTCAGGCGTTg < 2:346668/149‑1 (MQ=255) tGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATc > 5:156323/1‑149 (MQ=255) gCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCg < 2:45919/149‑1 (MQ=255) cAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCg < 4:311329/148‑1 (MQ=255) tgTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGa > 5:151432/1‑106 (MQ=255) tgTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGa < 6:151432/106‑1 (MQ=255) acCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATc > 5:194223/1‑132 (MQ=255) acCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATc < 6:194223/132‑1 (MQ=255) ccTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCAt < 6:156323/149‑1 (MQ=255) ccTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCAt > 5:30293/1‑149 (MQ=255) cTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCAtt > 4:3785/1‑149 (MQ=255) gcgcGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGc < 5:122223/148‑1 (MQ=255) ggTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGCCCGGCATTGCCTg > 5:143700/1‑147 (MQ=255) tGACTATCAGGCGGCCATCGACAGGGCCCTGGCCGGCCTGTACTTACTGCGTATCTGCCCGGTGCGGGGCCTCGACTGTCAGCAGGTCGAGGCCAGTCATGCACATGTGCAGGCGTTGATGGAACAGAAGGACCGGCATTGCCTTGAg < 3:47725/148‑1 (MQ=255) cTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCAc < 4:290476/149‑1 (MQ=255) tCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGc < 7:121297/131‑1 (MQ=255) tCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGc > 8:121297/1‑131 (MQ=255) tCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGc < 6:30293/149‑1 (MQ=255) gcCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCAc < 3:3785/149‑1 (MQ=255) ccTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAg < 1:197554/149‑1 (MQ=255) ccTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTg > 8:75698/1‑149 (MQ=255) aCTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTg > 3:280584/1‑113 (MQ=255) aCTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTg < 4:280584/113‑1 (MQ=255) ttACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAg > 5:17597/1‑149 (MQ=255) ttACTGGGAATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAg > 1:125149/1‑149 (MQ=255) aCTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGc < 6:56545/148‑1 (MQ=255) tGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCctg > 2:114553/1‑149 (MQ=255) gtttCAGCCCGGTGCGGGGCCTCGACTGGCAGCTGGTCGTGGCCAGTCATGGCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCctgctg < 6:143700/146‑1 (MQ=255) gTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGTAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCctgctg < 7:154844/149‑1 (MQ=255) tCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCAc > 3:149444/1‑99 (MQ=255) tCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCAc < 4:149444/99‑1 (MQ=255) tCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGcc < 8:35273/149‑1 (MQ=255) aGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCAc > 3:275589/1‑149 (MQ=255) gCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCAc > 8:143034/1‑148 (MQ=255) cccGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGaa > 8:121840/1‑118 (MQ=255) cccGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGaa < 7:121840/118‑1 (MQ=255) cccGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCAct > 4:286626/1‑148 (MQ=255) cGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTg > 5:213570/1‑149 (MQ=255) cGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACTGAATGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGtcatc < 7:143034/149‑1 (MQ=255) gggCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCAcc < 6:61637/97‑1 (MQ=255) gggCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCAcc > 5:61637/1‑97 (MQ=255) ggCCTCGACCTGCTGCCAGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGCCCGGCATTGCCTGGAGTCACTGCCGCGCACAGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCatcatc > 2:154476/1‑149 (MQ=255) gCCTCGACTGCCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGCAGGACCGGCCTTGCCAGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATcc > 4:261458/1‑149 (MQ=255) cTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCctt > 4:107708/1‑149 (MQ=255) tCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCcttc > 5:52906/1‑149 (MQ=255) tCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCcttc > 8:217428/1‑149 (MQ=255) cGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCcttct > 4:29994/1‑149 (MQ=255) gACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCcttc < 6:17597/147‑1 (MQ=255) aCTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCCttcttc < 3:29994/149‑1 (MQ=255) aCTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCCttcttc < 4:275589/149‑1 (MQ=255) | CAGCGTGCTCGCTCGGTGTTGGACCAGGCACGGGCGTGCCGGCTGCAGGCGCTGCTGTACACCTTGCGCGGTGACTATCAGGCGGCCATCGACAGCGCCCTGGCCGGCCTGGACTTACTGGGTATCAGCCCGGTGCGGGGCCTCGACTGGCAGCAGGTCGAGGCCAGTCATGCCCATGTGCAGGCGTTGATCGAACAGAAGGACCGGCATTGCCTGGAGTCACTGCCGCGCACCGACTCGGAGGAAGTGACGGTTGCCATCAGCCTGCTGGCCACTCTGTCATCATCCTTCTTC > NC_002947/5981735‑5982028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |