Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,005,007 | C→A | 9.9% | intergenic (+45/‑131) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,005,007 | 0 | C | A | 9.9% | 212.1 / 11.7 | 71 | intergenic (+45/‑131) | PP_5259/ydcJ | LysR family transcriptional regulator/metalloprotein |
Reads supporting (aligned to +/- strand): ref base C (27/35); new base A (4/3); total (31/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.92e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.27e-01 |
GCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCGCCAACGAT > NC_002947/6004862‑6005152 | gcAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGcgcg > 8:33308/1‑149 (MQ=255) cAGTGCCGGAGCGGATTACCTGGCGAATGCCGTGCATGCGGGAGAGGTGCCAAAGGGGCGGGCCCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCgg < 5:304158/149‑1 (MQ=255) cAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCgg < 7:33308/149‑1 (MQ=255) cAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCgg < 6:162403/149‑1 (MQ=255) aGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGc < 1:297240/149‑1 (MQ=255) aGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCg < 2:19721/149‑1 (MQ=255) gcgcATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAAGGGAGTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCgg < 5:271675/149‑1 (MQ=255) aTTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTTAAGCCGCTCCTAAGGGGACCGCGTAAGCGCGGCTTTAGGCGGGa > 6:223654/1‑147 (MQ=255) aTTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGa > 6:214792/1‑147 (MQ=255) ttACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGTCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAg < 7:141399/149‑1 (MQ=255) ttACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCCTTTCCCGGCTAAAGCCGCGCCTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGCGaa > 6:311033/1‑147 (MQ=25) aCCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAgg < 7:231052/148‑1 (MQ=255) aCCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCCCGGCTAAAGCCGCGCCTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGCGaagag > 8:167655/1‑145 (MQ=25) aCCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCCCGGCTAAAGCCGCGCCTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGCGaagag < 7:167655/148‑4 (MQ=25) tGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCg > 7:255796/1‑149 (MQ=255) gCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTc > 1:256948/1‑149 (MQ=255) gCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGCCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCCTTTCCCGGCTAAAGCCGCGCCTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCg < 5:311033/147‑1 (MQ=18) cGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAggg < 8:334860/136‑1 (MQ=255) cGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAggg > 7:334860/1‑136 (MQ=255) cGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGa < 2:256948/149‑1 (MQ=255) cGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCaaaaaa < 5:214792/149‑1 (MQ=255) ggCAGAGGTGCCAAAGGTGCGGGCGCTGTTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAg < 4:48593/149‑1 (MQ=255) ggCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCt > 1:169346/1‑112 (MQ=255) ggCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCt < 2:169346/112‑1 (MQ=255) gTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGCCCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGa > 2:84464/1‑148 (MQ=255) gTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGa < 6:161264/148‑1 (MQ=255) tGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGaca > 1:87973/1‑149 (MQ=255) ccAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCCCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGt < 5:211880/127‑1 (MQ=255) ccAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCCCGGCTAAAGCCGCTCCTACGGGGACCGCGAAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGt > 6:211880/1‑127 (MQ=255) cGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACtttt < 8:255796/149‑1 (MQ=255) ggCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACtttttt > 8:214751/1‑149 (MQ=255) cgcTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTc < 8:233888/149‑1 (MQ=255) gcTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCg > 8:253419/1‑149 (MQ=255) gtggAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCtt < 5:223654/148‑1 (MQ=255) gATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCa < 7:81969/147‑1 (MQ=255) gATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCa > 8:81969/1‑147 (MQ=255) gCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTAAGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAATGGCCCTCGACGTCGATCAAAAAAGGAA‑TGACACACTACCTTTTTTTCGCTTGTGAGCaaatagc > 6:192579/1‑144 (MQ=255) aggaGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGGAAAGTGCATTc < 2:214938/146‑1 (MQ=255) aGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAg < 6:167930/81‑1 (MQ=255) aGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAg > 5:167930/1‑81 (MQ=255) aGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTc < 7:214751/149‑1 (MQ=255) cAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑t > 7:109436/1‑101 (MQ=255) cAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑t < 8:109436/101‑1 (MQ=255) cAGGTTTGACGGCCTCTTCGCGGCTAAAACCGCTCCTACGGGGACCGCGGAGGCCCGGCTTTAGCCGGGAAAGGGCCGTAGAGGTCCATCAAAAAAGGAA‑TGACACACTCACTTATTTTAGCATGTGAGCAAAGTGCATTCCCAGCttt > 2:198659/1‑149 (MQ=255) ggTTTGACGGCCTGTTCGCGGCTAAAGCCTGTCCTACGGGGACCGGGTAGGCGGGGCTTTATCCGGGAAATGGGCGTCGAGGTCGATCAAAAAAGGAATTCACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTc < 1:84464/149‑1 (MQ=255) gTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGGGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAt < 5:192579/149‑1 (MQ=255) gTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAt < 7:253419/149‑1 (MQ=255) gTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAt > 1:207402/1‑149 (MQ=255) gTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAt < 6:83181/149‑1 (MQ=255) gTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTAGCTTGTGAGAAAAGTGCATTACCAGCTTTCAt > 8:100985/1‑149 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTc < 7:73632/142‑1 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTaa < 1:198659/148‑1 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTAACTTTTTTTCGGTTTTGAGCAAAGTGCATTCCCAGCTTTc > 8:73632/1‑142 (MQ=255) tctTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTcc > 7:73327/1‑148 (MQ=255) ttCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGacaca > 3:301955/1‑91 (MQ=255) ttCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGacaca < 4:301955/91‑1 (MQ=255) cgGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCa > 4:193638/1‑149 (MQ=255) gCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAAc < 2:207402/149‑1 (MQ=255) gCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGaa < 8:73327/149‑1 (MQ=255) ccGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAg > 1:336256/1‑149 (MQ=255) ccGCTCCCAAGGGGAACGGGTAGGGGGGGGTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAg < 3:5141/149‑1 (MQ=255) cgcgCCTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCACTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAGc > 2:261838/1‑149 (MQ=38) gcgccTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACttttttt > 5:138428/4‑88 (MQ=25) gcgccTACGCGGTCCCCGTAGGAGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACttttttt < 6:138428/85‑1 (MQ=25) cTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGACCCCAACCAGGAAGCTAGc > 2:69006/1‑148 (MQ=255) tACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTGACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAGCTAGCGa > 6:263364/1‑149 (MQ=255) ggACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAAcc < 4:248295/126‑1 (MQ=255) ggACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAAcc > 3:248295/1‑126 (MQ=255) ccGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCGc > 7:158114/1‑148 (MQ=255) gcgTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTAACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTATCATGTAA‑GCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCGCCaa < 5:263364/149‑1 (MQ=255) tAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCGCCAACGa < 7:100985/149‑1 (MQ=255) ggCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAACGCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCGCCAACGAt < 1:69006/149‑1 (MQ=255) | GCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATTGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAA‑TGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAA‑GCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCGCCAACGAT > NC_002947/6004862‑6005152 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |