Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 427,753 | G→T | 6.7% | L16M (CTG→ATG) ‡ | PP_0350 ← | ferrichrome‑iron receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 427,753 | 0 | G | T | 6.7% | 186.1 / 3.8 | 60 | L16M (CTG→ATG) ‡ | PP_0350 | ferrichrome‑iron receptor |
Reads supporting (aligned to +/- strand): ref base G (29/27); new base T (2/2); total (31/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.54e-01 |
CGATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAA > NC_002947/427606‑427895 | cGATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAgg < 3:273092/149‑1 (MQ=255) ccAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGcc < 5:108047/146‑1 (MQ=255) ccAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGcc > 6:108047/1‑146 (MQ=255) ccGGCCTGGCTGGCGATCTGGTGGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCCGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGgc < 5:327353/148‑1 (MQ=255) cGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGgcg > 2:32218/1‑148 (MQ=255) ggCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGTCGATGGCCAGGGCCATCAGGCTGGGGCGCa < 1:32218/149‑1 (MQ=255) ccTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGAGCAg > 4:68519/1‑148 (MQ=255) gctggcGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGatat < 3:202090/149‑1 (MQ=255) gctggcGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGat < 3:68519/147‑1 (MQ=255) gcGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGa < 7:22962/147‑1 (MQ=255) tCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAg < 6:247837/136‑1 (MQ=255) tCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAg > 5:247837/1‑136 (MQ=255) tggtggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATg > 2:12059/1‑149 (MQ=255) ccAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGcggcgg < 4:3293/149‑1 (MQ=255) aGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGtt < 5:170616/149‑1 (MQ=255) gcgcgcTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGt < 7:261054/144‑1 (MQ=255) gcgcgcTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGt > 8:261054/1‑144 (MQ=255) gcgcgcTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTc > 3:236039/1‑149 (MQ=255) aGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGt > 5:119280/1‑149 (MQ=255) aGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGt < 7:299625/149‑1 (MQ=255) gTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgctt < 6:119280/148‑1 (MQ=255) tAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACg > 6:235773/1‑113 (MQ=255) tAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACg < 5:235773/113‑1 (MQ=255) tAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgcttg < 1:12059/148‑1 (MQ=255) ggCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTtgctg > 1:329253/1‑149 (MQ=255) gACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGTCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt < 8:83281/149‑1 (MQ=255) gACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCTATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt > 1:230616/1‑149 (MQ=255) aCGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTg < 1:37122/149‑1 (MQ=255) aCGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGCATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGCTAAGTGCATGCTGCTTCCTTg > 3:299985/1‑149 (MQ=255) ttGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGt > 7:328785/1‑122 (MQ=255) ttGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGt < 8:328785/122‑1 (MQ=255) gCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc > 3:187224/1‑146 (MQ=255) tCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc > 1:269711/1‑144 (MQ=255) cggcgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTg > 3:344841/1‑148 (MQ=255) gAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAg > 3:49791/1‑149 (MQ=255) cAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa < 2:329253/149‑1 (MQ=255) ggCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAg > 4:145027/1‑149 (MQ=255) gTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCt < 4:187224/148‑1 (MQ=255) tCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTg > 6:274699/1‑148 (MQ=255) gggCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAata > 2:101293/1‑149 (MQ=255) gCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt > 1:271375/1‑149 (MQ=255) gCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt > 7:313886/1‑149 (MQ=255) aGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCACCGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTga < 4:49791/149‑1 (MQ=255) aGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCACCGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTga < 4:225957/149‑1 (MQ=255) aGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt > 4:159610/1‑147 (MQ=255) aGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt < 3:159610/147‑1 (MQ=255) gCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTgag < 4:236039/149‑1 (MQ=255) cccAGCCTGATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGt > 7:238562/2‑70 (MQ=37) cccAGCCTGATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGt < 8:238562/69‑1 (MQ=37) ccAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGCCGGGGAAGTGCTGGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt > 8:230833/1‑145 (MQ=255) ggCCGATGGCCAGGGCTATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAatt < 2:230616/149‑1 (MQ=255) gCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCtt < 2:309712/92‑1 (MQ=255) gCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCtt > 1:309712/1‑92 (MQ=255) ctgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattat > 1:35521/3‑149 (MQ=255) ccGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa > 6:149419/1‑118 (MQ=255) ccGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa < 5:149419/118‑1 (MQ=255) cGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattatt > 6:154310/1‑149 (MQ=255) aTGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTAttt > 8:243644/1‑148 (MQ=255) tGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTaa < 2:35521/149‑1 (MQ=255) aGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa > 1:59225/1‑109 (MQ=255) aGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa < 2:59225/109‑1 (MQ=255) | CGATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAA > NC_002947/427606‑427895 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |