| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,060,489 | T→C | 6.2% | intergenic (+125/+56) | PP_5311 → / ← PP_5312 | signal transduction protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,060,489 | 0 | T | C | 6.2% | 234.7 / 4.4 | 81 | intergenic (+125/+56) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (41/35); new base C (2/3); total (43/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01 | |||||||||||
CATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCT > NC_002947/6060350‑6060636 | cATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcgc < 3:308130/148‑1 (MQ=255) tgatgtggttccaggggttgatgaaatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCgg > 7:229288‑M1/81‑149 (MQ=255) tGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCCGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCggg > 2:344121/1‑149 (MQ=255) cACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCa > 6:322927/1‑149 (MQ=255) aCCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCAc > 8:235555/1‑149 (MQ=255) cGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGc > 5:184443/1‑149 (MQ=255) agcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCccgctcc > 5:155144‑M2/1‑142 (MQ=255) cattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCccgctcc > 8:49272‑M2/1‑140 (MQ=255) cattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCccgctcc < 7:49272‑M2/147‑8 (MQ=255) ttaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTGTGGACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCccgcgaaacaa > 3:201921‑M2/1‑138 (MQ=255) aaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCccgctcccacag > 1:160214‑M2/1‑136 (MQ=255) aaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCccgctcccacag > 6:332531‑M2/1‑136 (MQ=255) acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTaa < 8:106308/149‑1 (MQ=255) acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTa > 8:62392/1‑148 (MQ=255) caTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTa > 5:343817/1‑147 (MQ=255) aTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑g > 7:286858/1‑149 (MQ=255) tAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑Gc < 4:57675/149‑1 (MQ=255) cctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGtc > 7:135758‑M1/53‑149 (MQ=255) tgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCgg < 3:167661‑M1/69‑1 (MQ=255) tgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCgg > 4:167661‑M1/51‑119 (MQ=255) gAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATcc < 7:188650/149‑1 (MQ=255) tGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTACGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCgg > 8:63485/1‑149 (MQ=255) tCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGc < 5:322927/149‑1 (MQ=255) tCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGc > 2:80527/1‑149 (MQ=255) tGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCtt > 1:259812/1‑148 (MQ=255) cAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGcc > 6:193265/1‑149 (MQ=255) tCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCttt < 1:249451/148‑1 (MQ=255) aaCAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTtcttct < 5:193265/149‑1 (MQ=255) accgCTGGCGCGATGTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTcttctt < 8:267700/146‑1 (MQ=255) aCAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTcttctt > 1:258263/1‑149 (MQ=255) cAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt < 2:259812/149‑1 (MQ=255) cAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTACGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt < 7:63485/149‑1 (MQ=255) aGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTg < 7:235555/149‑1 (MQ=255) cgcgATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCAGCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCa < 7:194899/149‑1 (MQ=255) gcgATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGTAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCTCGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg < 1:162129/149‑1 (MQ=255) cgtttttGGTCTGTGGGCGGGGGGTTTCCCGGGAAAAACGGGGCAGCCGGTGGCATTCACCGCGTGGCTTGGTTGGGGGGCAAGGCCGCT‑CCCAAATGTAAACGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg < 1:80527/146‑1 (MQ=255) ttttGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTAt > 4:283965/1‑149 (MQ=255) ttGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTAtt < 6:184443/148‑1 (MQ=255) aCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcatc < 7:62392/149‑1 (MQ=255) tgGGAGCGGGCTTGCCCCCCAACACCGGCGCAGCCGGTTCCAAGCACCTCGTCGCTTGTTTCGCGGGGACGCCCCCA‑CCCACACGTAAA‑GCGTCCACATCCCCGACGGGCTTCAGCCGTTGATCATTGGTTTCAGGTATTTCATCAAcc > 4:342492/1‑149 (MQ=25) TGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAcc < 6:92596‑M1/149‑1 (MQ=255) TGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAcc > 8:286858‑M1/1‑149 (MQ=255) ttcGCGGGCAAGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAcccc < 4:232248‑M1/146‑1 (MQ=255) GGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAccc > 3:283965‑M1/1‑148 (MQ=255) GAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCAGCGGGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCt > 3:342492‑M1/1‑149 (MQ=255) GGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGaa > 2:258263‑M1/1‑149 (MQ=255) GCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCACCCCCTGGAAc < 5:52258‑M1/148‑1 (MQ=255) GCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTCCTTCTTTGGTTTCAg > 8:148023‑M1/1‑126 (MQ=255) GCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTCCTTCTTTGGTTTCAg < 7:148023‑M1/126‑1 (MQ=255) ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCa > 1:283549/1‑149 (MQ=255) cgcgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc > 3:71266/1‑149 (MQ=255) cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCccgctcccaccgactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgttgcctcgctaacgaaccatgactccct < 5:89318‑M2/146‑91 (MQ=255) cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCccgctcccacagactgattgtcattaagcgggcctatcgctacagtgaccgcccgttttttgttgcctcgctaacgaatcatgactccct < 8:324835‑M2/146‑91 (MQ=255) gcgAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCccgctcccacagactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgtt > 1:284372‑M2/1‑55 (MQ=255) gcgAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCccgctcccacagactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgtt < 2:284372‑M2/119‑65 (MQ=255) cgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCtt > 4:289132/1‑94 (MQ=255) cgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCtt < 3:289132/94‑1 (MQ=255) gAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAg > 4:334805/1‑149 (MQ=255) acacCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAgcg > 4:321672/1‑149 (MQ=255) cacCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAgcgc < 1:344121/149‑1 (MQ=255) ccGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg > 7:300057/1‑111 (MQ=255) ccGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg < 8:300057/111‑1 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcgt < 3:34527/119‑3 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcgt > 4:34527/1‑117 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcat < 3:34528/119‑1 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcat > 4:34528/1‑119 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCgg > 5:363121/1‑149 (MQ=255) gTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGa < 6:363121/149‑1 (MQ=255) gTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGa < 5:92596/149‑1 (MQ=255) tGCACCGAGTCGCTTGTTTCGCGGGGACGCGCGCT‑CCCAGAGGTAAA‑GCTTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTTTTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGa < 4:216365/149‑1 (MQ=255) cACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGAt < 2:283549/148‑1 (MQ=255) cACCGCGGCGCCTGTTTCGCGGGCACGCccgctcccaccgactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgttgcctcgctaacgaaccatgactcccttagaacgctatcaagcagatctgaaacgtc > 6:89318‑M2/1‑28 (MQ=255) aCCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTgg > 3:252263/1‑109 (MQ=255) aCCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTgg < 4:252263/109‑1 (MQ=255) ccGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGAtgtg > 5:202482/1‑149 (MQ=255) cgTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTttctt > 3:101369/1‑74 (MQ=255) cgTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTttctt < 4:101369/74‑1 (MQ=255) tCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATAATCCCCGTCGCGCTTCAGCCTGTCTTCTTTGGTATCAGGTATTTCATCAACCCCAGGAACCACATCCCCAGCGCCGGGTTCCCCTTGATCTGGATGTGCTTGt > 8:57634/1‑149 (MQ=255) cGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTc < 4:71266/149‑1 (MQ=255) cTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCt > 3:240633/1‑149 (MQ=255) cTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCt < 6:343817/149‑1 (MQ=255) | CATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCT‑CCCACAGGTAAA‑GCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCT > NC_002947/6060350‑6060636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |