Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,101,843 | A→T | 7.3% | E332V (GAA→GTA) | uvrD → | DNA‑dependent ATPase I/helicase II |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,101,843 | 0 | A | T | 7.3% | 151.0 / 3.4 | 55 | E332V (GAA→GTA) | uvrD | DNA‑dependent ATPase I/helicase II |
Reads supporting (aligned to +/- strand): ref base A (25/25); new base T (2/2); total (27/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.25e-01 |
AGCAGAACTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATGG > NC_002947/6101696‑6101990 | aGCAGAACTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGaa < 2:262764/149‑1 (MQ=255) aaCTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAgcgcg > 5:22245/1‑149 (MQ=255) ccGCTCCACCGGCTGCATCCTCAAGGCGGCCAACGCGGTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTAt < 4:122945/148‑1 (MQ=255) cGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGt > 8:215844/1‑149 (MQ=255) cGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGt > 6:239802/1‑149 (MQ=255) cTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCg > 2:74761/1‑149 (MQ=255) cACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTgg < 2:220470/149‑1 (MQ=255) ggcggcATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAAc > 4:124075/1‑149 (MQ=255) gcggcATCCTCAAGGCGGCCAACGCGATGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAAc > 5:142800/1‑148 (MQ=255) gcATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATc > 2:254615/1‑149 (MQ=255) cTCAAGGCGGCCAACGCGCTGATCGCCAACAACATCTGGCGCCTGGGCAAGGAACTGTGGACCGACATTGGCTAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACAATCgaga < 2:248695/148‑1 (MQ=255) tCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGc > 3:266836/1‑149 (MQ=255) tCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGc > 2:265182/1‑149 (MQ=255) aGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTg < 3:124075/149‑1 (MQ=255) cggcCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGt < 1:74761/149‑1 (MQ=255) cggcCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATCGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTc < 4:339340/149‑1 (MQ=255) ccAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑g > 6:54020/1‑149 (MQ=255) cgcgCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAgg < 7:215844/149‑1 (MQ=255) aTCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATgc < 1:254615/149‑1 (MQ=255) gCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATgcgc < 4:266836/148‑1 (MQ=255) ccAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGCCCCTGTACGCGGCCTACTACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATgcgcg > 6:112239/1‑148 (MQ=255) aacaacAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGc > 2:288028/1‑138 (MQ=255) aacaacAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGc < 1:288028/138‑1 (MQ=255) aacaGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAATGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACga < 6:65455/149‑1 (MQ=255) aGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGAt < 5:54020/149‑1 (MQ=255) gcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACga > 5:92193/1‑139 (MQ=255) gcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACga < 6:92193/139‑1 (MQ=255) gcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATc > 3:40896/1‑149 (MQ=255) gcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATc > 2:225720/1‑149 (MQ=255) gcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATc < 1:265182/149‑1 (MQ=255) cTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGc > 1:101762/1‑143 (MQ=255) cTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGc < 2:101762/143‑1 (MQ=255) cTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCt < 1:224988/149‑1 (MQ=255) ggAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATgcg > 1:120492/1‑121 (MQ=255) ggAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATgcg < 2:120492/121‑1 (MQ=255) gtgGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACg > 4:199920/1‑149 (MQ=255) gACCGACATGGGCGAAGGCGAACCACTGCCCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCCATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGcc > 2:277781/1‑148 (MQ=255) cATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgc < 5:239802/149‑1 (MQ=255) aTGGGCGAAGGGGAACCACTGACCGTGTACGCGGCCTACAACGAT‑CACGACGAAGCGCGCTATGTGGTGGAAACCATAGAGAGCCTGGTCAACTCAGGGCAATGCGCGGAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgc < 1:277781/149‑1 (MQ=255) tGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgcgc < 5:112239/149‑1 (MQ=255) gcgaaggcgaaCCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTg > 1:247161/1‑149 (MQ=255) gaaCCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGaa > 3:3010/1‑147 (MQ=255) aCTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGcc < 4:306390/124‑1 (MQ=255) aCTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGcc > 3:306390/1‑124 (MQ=255) cTGTACGCGGCCTACAACGAG‑CACGACGCAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGGCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCGGGAAGAGGCCcagcatga < 4:12612/149‑5 (MQ=255) tACGCGGCCTACAACGAG‑CACTACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTgcgc < 6:142800/147‑1 (MQ=255) cgcgGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAgc < 3:199920/149‑1 (MQ=255) gcgGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAgcg > 7:91891/1‑149 (MQ=255) ccTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATc < 4:40896/149‑1 (MQ=255) aCAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTACAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATccc > 7:142342/1‑148 (MQ=255) cAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATccc > 3:76539/1‑147 (MQ=255) cAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATccc < 4:76539/147‑1 (MQ=255) tttccACGACATAGCGCGCTTCGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgc > 7:261727/5‑107 (MQ=38) tttccACGACATAGCGCGCTTCGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgc > 7:266513/5‑107 (MQ=38) tttccACGACATAGCGCGCTTCGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgc < 8:261727/103‑1 (MQ=38) tttccACGACATAGCGCGCTTCGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTcgc < 8:266513/103‑1 (MQ=38) cgacgaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCt < 1:225720/149‑1 (MQ=255) gaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATgg > 6:61002/1‑149 (MQ=255) | AGCAGAACTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAG‑CACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAA‑GCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATGG > NC_002947/6101696‑6101990 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |