Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 461,030 C→G 11.2% V479L (GTG→CTG)  pqqF ← coenzyme PQQ synthesis protein F

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947461,0300CG11.2% 182.3 / 10.7 61V479L (GTG→CTG) pqqFcoenzyme PQQ synthesis protein F
Reads supporting (aligned to +/- strand):  ref base C (29/25);  new base G (4/3);  total (33/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01

CAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCATAGGTGAAG  >  NC_002947/460887‑461176
                                                                                                                                               |                                                                                                                                                  
cAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCActgctg                                                                                                                                               <  1:154714/149‑1 (MQ=255)
         ccGTACCGCGTCTGGCAGTTGCGTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCAGTGCTGCGGGCAgtg                                                                                                                                      <  8:242570/149‑3 (MQ=255)
               cgcgTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCActg                                                                                                                                                  >  4:15677/1‑131 (MQ=255)
               cgcgTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCActg                                                                                                                                                  <  3:15677/131‑1 (MQ=255)
               cgcgTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGgcgc                                                                                                                                <  2:287477/149‑1 (MQ=255)
                 cgTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAg                                                                                                                              <  7:230156/149‑1 (MQ=255)
                          gTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGgc                                                                                                                                  <  5:68255/136‑1 (MQ=255)
                          gTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGgc                                                                                                                                  >  6:68255/1‑136 (MQ=255)
                          gTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGc                                                                                                                     >  1:283592/1‑149 (MQ=255)
                              cTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAg                                                                                                                  <  4:182150/148‑1 (MQ=255)
                                 gAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCa                                                                                                                   <  6:245605/144‑1 (MQ=255)
                                 gAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCa                                                                                                                   >  5:245605/1‑144 (MQ=255)
                                       ggCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCgg                                                                                                        >  1:266387/1‑149 (MQ=255)
                                       ggCCCTGATCCCCATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCgg                                                                                                        >  4:254856/1‑149 (MQ=255)
                                          ccTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCAc                                                                                                     >  8:36694/1‑149 (MQ=255)
                                                 cccaTCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTa                                                                                              <  3:254856/146‑1 (MQ=255)
                                                   gATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACt                                                                                            >  3:187752/1‑149 (MQ=255)
                                                    aTCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTg                                                                                           >  2:136086/1‑149 (MQ=255)
                                                    aTCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTg                                                                                           >  5:111223/1‑149 (MQ=255)
                                                    aTCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTg                                                                                           <  2:266387/149‑1 (MQ=255)
                                                     tCACGGCCGGTGGCAGCGCCGTGCAGGGCAGACAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTTCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTg                                                                                           <  8:263322/148‑1 (MQ=255)
                                                      cAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTg                                                                                           >  1:133121/1‑147 (MQ=255)
                                                         ggCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCa                                                                                                                   >  6:205797/1‑120 (MQ=255)
                                                         ggCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCa                                                                                                                   <  5:205797/120‑1 (MQ=255)
                                                         ggCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGtt                                                                                      <  2:283592/149‑1 (MQ=255)
                                                           ccGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTg                                                                                     >  3:161132/1‑148 (MQ=255)
                                                           ccGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTg                                                                                     >  1:158246/1‑148 (MQ=255)
                                                                     cgcCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGgcgc                                                                          <  2:158246/149‑1 (MQ=255)
                                                                      gcCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGcgcg                                                                         <  7:36694/149‑1 (MQ=255)
                                                                      gcCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGcgcg                                                                         <  2:133121/149‑1 (MQ=255)
                                                                            cAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTcac                                                                    <  1:136086/148‑1 (MQ=255)
                                                                                    ccagcAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCt                                                           >  8:18242/1‑149 (MQ=255)
                                                                                    ccagcAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCt                                                           <  4:187752/149‑1 (MQ=255)
                                                                                               cAGGTGGCTTGAGCATCAAGGCCAAGGCATGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGAAACTGCCAGTATACCCCGGCACTGCTGTACAGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGcc                                                >  8:282193/1‑149 (MQ=255)
                                                                                                aGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTc                                                             <  4:237812/135‑1 (MQ=255)
                                                                                                aGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTc                                                             >  3:237812/1‑135 (MQ=255)
                                                                                                     gCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGcc                                          >  5:156947/1‑149 (MQ=255)
                                                                                                      cTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCTGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCt                                         >  1:163303/1‑149 (MQ=255)
                                                                                                       ttGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTg                                        >  7:205793/1‑149 (MQ=255)
                                                                                                         gAGCATTAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCgg                                                                        <  1:217478/115‑1 (MQ=255)
                                                                                                         gAGCATTAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCgg                                                                        >  2:217478/1‑115 (MQ=255)
                                                                                                          aGCATCAAGGCCAAGGCTTGTTCCACTGCCTGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTc                                     <  2:163303/149‑1 (MQ=255)
                                                                                                            cATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCa                                   <  6:294959/149‑1 (MQ=255)
                                                                                                             aTCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAg                                  <  8:205793/149‑1 (MQ=255)
                                                                                                              tCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAg                                  >  4:96594/1‑148 (MQ=255)
                                                                                                              tCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGc                                 >  4:191434/1‑149 (MQ=255)
                                                                                                                     caaggcTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTc                                                                      >  2:49695/1‑105 (MQ=255)
                                                                                                                     caaggcTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTc                                                                      <  1:49695/105‑1 (MQ=255)
                                                                                                                        ggcTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGt                        >  3:264772/1‑148 (MQ=255)
                                                                                                                         gcTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTaa                      >  7:2451/1‑149 (MQ=255)
                                                                                                                           ttGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACg                    >  4:52986/1‑149 (MQ=255)
                                                                                                                               cggccTGCCAGCAGCAGTGCTGCGGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGca                                >  7:179119/5‑133 (MQ=255)
                                                                                                                                 cACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTc                                     >  2:319710/1‑126 (MQ=255)
                                                                                                                                 cACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTc                                     <  1:319710/126‑1 (MQ=255)
                                                                                                                                    tGCCAGCAGCAGTGCTGCGGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTgg               <  7:127139/145‑1 (MQ=255)
                                                                                                                                    tGCCAGCAGCAGTGCTGCGGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTgg               >  8:127139/1‑145 (MQ=255)
                                                                                                                                    tGCCAGCAGCAGTGCTGCGGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCa           >  2:80683/1‑149 (MQ=255)
                                                                                                                                      cccGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCa           >  2:115254/1‑147 (MQ=255)
                                                                                                                                      cccGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCATa         <  6:106128/149‑1 (MQ=255)
                                                                                                                                      cccGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCATa         <  3:96594/149‑1 (MQ=255)
                                                                                                                                      ccagcagcaGTGCTGCGGGCAGTCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGt                                                                       >  7:267230/4‑87 (MQ=39)
                                                                                                                                      ccagcagcaGTGCTGCGGGCAGTCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGt                                                                       <  8:267230/84‑1 (MQ=39)
                                                                                                                                            gcaCTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCATAGGTGaa   <  6:111223/149‑1 (MQ=255)
                                                                                                                                             caCTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCATAGGTGAAg  >  5:349746/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
CAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGGTGGCTTGAGCATCAAGGCCAAGGCTTGTTCCACTGCCCGCAGCACTGCTGCTGGCAGGCCGGCGCAGTGCAACTGCCAGTATTCCCCGGCACTGCTGTACTGCAGTTGCACGGAGGCGCGGTCACAACGTTCCTGCAGTGGCGCCAGGGCCTGTTCCAGCACACGCTGTAACGGCTGGCGCATAGGTGAAG  >  NC_002947/460887‑461176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: