Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 467,649 T→C 7.4% Q1103R (CAG→CGG)  PP_0386 ← sensory box protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947467,6490TC 7.4% 152.2 / 2.4 54Q1103R (CAG→CGG) PP_0386sensory box protein
Reads supporting (aligned to +/- strand):  ref base T (22/28);  new base C (2/2);  total (24/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

GGCAGGCGCTTGAGGTAGCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTCCAGGCCTGCATCTGCCG  >  NC_002947/467505‑467794
                                                                                                                                                |                                                                                                                                                 
ggCAGGCGCTTGAGGTAGCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAg                                                                                                                                               <  6:131467/149‑1 (MQ=255)
     gcgcTTGAGGTAGCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCAc                                                                                                                                          <  1:57701/149‑1 (MQ=255)
             ggTAGCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTc                                                                                                                                  <  6:339661/149‑1 (MQ=255)
              gTAGCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTc                                                                                                                                  <  4:335872/148‑1 (MQ=255)
                 gCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCt                                                                                                                              >  7:67029/1‑149 (MQ=255)
                    gAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGGTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGAt                                                                                                                           >  5:270025/1‑149 (MQ=255)
                     tgCGAGGTATTGCCGGGGGCGTAGTGATCGTTGTCCAGCTGTAGGGGGAGTTTGTTATGTTGGTACAGCACGGGGTTGGGCTCTTCTGGCTGGCTCATGATGAAGTTTTCGGTGTTTTCCAACTCCTGGTCAGGGTCCTTCTGGTGAt                                                                                                                           <  8:67029/147‑1 (MQ=255)
                         aGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAgg                                                                                                                                              <  1:270543/125‑1 (MQ=255)
                         aGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAgg                                                                                                                                              >  2:270543/1‑125 (MQ=255)
                                 ccGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAg                                                                                                              >  1:235954/1‑149 (MQ=255)
                                       ccGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTc                                                                                                        <  6:270025/149‑1 (MQ=255)
                                        cGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCTGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCg                                                                                                       <  3:5522/149‑1 (MQ=255)
                                        cGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTc                                                                                                        >  3:146375/1‑148 (MQ=255)
                                        cGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCg                                                                                                       <  3:150939/149‑1 (MQ=255)
                                               aTCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGcc                                                                                                >  4:100601/1‑149 (MQ=255)
                                               aTCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGcc                                                                                                >  4:281026/1‑149 (MQ=255)
                                               aTCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACCGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGcc                                                                                                >  7:114184/1‑149 (MQ=255)
                                               aTCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACCGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGcc                                                                                                >  7:111401/1‑149 (MQ=255)
                                               aTCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCAAGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCg                                                                                                                                        <  5:6272/109‑1 (MQ=255)
                                               aTCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCAAGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCg                                                                                                                                        >  6:6272/1‑109 (MQ=255)
                                                  gATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGt                                                                                              <  4:146375/148‑1 (MQ=255)
                                                    tGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGcc                                                                                           <  3:100601/149‑1 (MQ=255)
                                                      gCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAg                                                                                         >  8:180139/1‑149 (MQ=255)
                                                        cAGCTGGACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCCGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGt                                                                                       <  8:229204/149‑1 (MQ=255)
                                                          gCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACCGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGc                                                                                     <  8:111401/149‑1 (MQ=255)
                                                           gtGTACGCCGCGTTTCTTCATGTGGTACAGGACGGTCTGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACCGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGc                                                                                     <  8:114184/147‑1 (MQ=255)
                                                                 gCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGTGCCGTGCCAGGTGCGGGTgg                                                                               >  4:215551/1‑148 (MQ=255)
                                                                 gCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGTGCCGTGCCAGGTGCGGGTgg                                                                               <  3:215551/148‑1 (MQ=255)
                                                                   cGAGTTTCTTCAGTTGGTACAGCACGGCCATGGCCTCTTGTGCCTGGCTAATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCtt                                                                                                                    <  8:74346/109‑1 (MQ=255)
                                                                   cGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTCATGGTGCtt                                                                                                                    >  7:74346/1‑109 (MQ=255)
                                                                                        gCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGgcg                                                                             >  8:163109/1‑127 (MQ=255)
                                                                                        gCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGgcg                                                                             <  7:163109/127‑1 (MQ=255)
                                                                                        gCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGtt                                                        >  3:212789/1‑148 (MQ=255)
                                                                                        gCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGtt                                                        <  4:212789/148‑1 (MQ=255)
                                                                                         cACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGa                                                      >  7:282303/1‑149 (MQ=255)
                                                                                               cAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGa                                                  >  2:251040/1‑147 (MQ=255)
                                                                                               cAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGGGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACa                                                <  7:180139/149‑1 (MQ=255)
                                                                                                  ggCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCg                                             >  6:97890/1‑149 (MQ=255)
                                                                                                    gctctTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCggg                                           <  4:149620/148‑1 (MQ=255)
                                                                                                            gCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAggg                                   >  7:218510/1‑149 (MQ=255)
                                                                                                              cTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGtt                                 <  7:10970/149‑1 (MQ=255)
                                                                                                                 gCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTgg                               >  8:247133/1‑148 (MQ=255)
                                                                                                                   tCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAg                            >  5:283476/1‑149 (MQ=255)
                                                                                                                      tgatgaACTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGtgc                         <  4:95888/149‑1 (MQ=255)
                                                                                                                        atgaAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTTTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGtgct                        >  5:352200/1‑148 (MQ=255)
                                                                                                                        atgaAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGtgctg                       >  7:129067/1‑149 (MQ=255)
                                                                                                                         tgaAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGtgctgc                      >  5:275520/1‑149 (MQ=255)
                                                                                                                         tgaAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGtgctgc                      <  1:251040/149‑1 (MQ=255)
                                                                                                                           aaGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTgctgct                     <  6:275520/148‑1 (MQ=255)
                                                                                                                              ttttCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTcc                  <  8:218510/148‑1 (MQ=255)
                                                                                                                                   ggTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTCCAGGCCt            <  3:281026/149‑1 (MQ=255)
                                                                                                                                          tCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTCCAGGCCTGCATCt      <  7:247133/148‑1 (MQ=255)
                                                                                                                                          tCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGGGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTCCAGGCCTGCATCt      <  6:214137/148‑1 (MQ=255)
                                                                                                                                             aaCTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTCCAGGCCTGCATCTGCCg  <  2:235954/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
GGCAGGCGCTTGAGGTAGCTGAGCGAGGAATAGCCGGTGCCGAAGTCATCGATGGCCAGCTGTACGCCGAGTTTCTTCAGTTGGTACAGCACGGCCAGGGCCTCTTCTGCCTGGCTCATGATGAAGTTTTCGGTGATTTCCAACTGCAGGTCACCGGCCTTCAGCTGATGGTGCTTGAGCAGTTGTTCGATGCGCCGTGCCAGGTGCGGGTGGCGCAGCTGGGCGCCGGCAAGGTTGATCGACAGCGGGCCGAAGGGTTGGTAGTGCTGCTTCCAGGCCTGCATCTGCCG  >  NC_002947/467505‑467794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑