Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 491,017 | C→G | 5.4% | A468A (GCG→GCC) | lptD ← | LPS‑assembly protein LptD |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 491,017 | 0 | C | G | 5.4% | 240.5 / 2.1 | 74 | A468A (GCG→GCC) | lptD | LPS‑assembly protein LptD |
Reads supporting (aligned to +/- strand): ref base C (31/39); new base G (2/2); total (33/41) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
ATCAAAGACGGCACTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGTAGAACGGGTCGCTGATGTCG > NC_002947/490870‑491164 | atcaAAGACGGCACTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTc < 7:338192/148‑1 (MQ=255) tcaAAGACGGCACTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGc > 1:179588/1‑149 (MQ=255) aCGGCACTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGTGACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCAtct > 1:84636/1‑149 (MQ=255) cACTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAg < 3:313550/149‑1 (MQ=255) aCTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAgg > 6:182790/1‑149 (MQ=255) tCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTACGAGATGGCGACCATCTCGCAgatca < 4:93101/148‑5 (MQ=255) tCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGcaca > 4:95178/1‑149 (MQ=255) tCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGcaca > 4:333272/1‑149 (MQ=255) cAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAACGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGcac < 6:178463/147‑1 (MQ=255) gATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTc < 7:32563/149‑1 (MQ=255) tCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCaa > 4:344971/1‑149 (MQ=255) tCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCaa > 2:109564/1‑149 (MQ=255) tCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCaa < 3:333272/149‑1 (MQ=255) cACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGcc > 8:179644/1‑125 (MQ=255) cACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGcc < 7:179644/125‑1 (MQ=255) aaGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGgt > 1:56326/1‑149 (MQ=255) gCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGgtgt < 2:56326/149‑1 (MQ=255) cGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTa < 7:109783/149‑1 (MQ=255) gCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTc < 2:84636/149‑1 (MQ=255) cTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCg > 4:78097/1‑149 (MQ=255) cTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCg > 4:177942/1‑149 (MQ=255) gTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCg < 6:105766/149‑1 (MQ=255) tcGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTc > 8:261529/1‑96 (MQ=255) tcGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTc < 7:261529/96‑1 (MQ=255) tcGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGCCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCgg > 3:193545/1‑147 (MQ=255) gT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAg < 3:177942/148‑1 (MQ=255) gT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAg < 2:179588/148‑1 (MQ=255) t‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGt > 8:234041/1‑103 (MQ=255) t‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGt < 7:234041/103‑1 (MQ=255) t‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGt < 3:78097/149‑1 (MQ=255) aCCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGt > 4:65553/1‑148 (MQ=255) cccAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTc < 3:344971/148‑1 (MQ=255) cAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTa < 1:129613/100‑1 (MQ=255) cAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTa > 2:129613/1‑100 (MQ=255) ggTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCa > 5:15651/1‑149 (MQ=255) gTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGgtg < 4:209475/121‑1 (MQ=255) gTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCAc > 6:188275/1‑149 (MQ=255) ttCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCAcc < 5:182790/149‑1 (MQ=255) aaCCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCctgc < 3:105115/149‑1 (MQ=255) aaCCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCctgc < 3:205585/149‑1 (MQ=255) cGCCAGGCTGGAACGACAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAg > 5:213465/1‑116 (MQ=255) cGCCAGGCTGGAACGACAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAg < 6:213465/116‑1 (MQ=255) cGCCAGGCTGGAACAGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTgg < 4:217539/149‑1 (MQ=255) cAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGtt > 8:54878/1‑148 (MQ=255) ggCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAg < 8:330254/111‑1 (MQ=255) ggCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAg > 7:330254/1‑111 (MQ=255) tGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTcagcag > 4:296186/1‑149 (MQ=255) gAACGGCAGCGTACCGTTCAGTGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCt < 5:369927/115‑1 (MQ=255) gAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCt > 6:369927/1‑115 (MQ=255) gAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGt < 4:103043/119‑1 (MQ=255) gAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGt > 3:103043/1‑119 (MQ=255) gAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAgg < 6:15651/148‑1 (MQ=255) aaCGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTc > 2:293754/1‑149 (MQ=255) gCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCtt < 4:152125/149‑1 (MQ=255) gCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGACATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCtt < 5:147364/149‑1 (MQ=255) gTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTc < 7:54878/149‑1 (MQ=255) aGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAAt > 3:242759/1‑149 (MQ=255) gggTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATc < 5:188275/149‑1 (MQ=255) gTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCg < 7:138100/95‑1 (MQ=255) gTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCg > 8:138100/1‑95 (MQ=255) gCTGCGGCAGGCGATCATACGGCGTGGATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGc > 1:187263/1‑104 (MQ=255) gCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGc < 2:187263/103‑1 (MQ=255) cTGCGACAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCg > 6:368178/1‑148 (MQ=255) cGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGAt < 3:55106/148‑1 (MQ=255) cGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGAt < 3:95178/148‑1 (MQ=255) gATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCTTGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGATCAGCAGGTCGCGGCTTTCCACGCCAATCTCGTCGGATTCCAGGTcc > 1:136187/1‑149 (MQ=255) gATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTcc < 4:242759/149‑1 (MQ=255) aTACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGa < 3:65553/149‑1 (MQ=255) tACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGAACCAGCAgggt > 4:160228/1‑105 (MQ=255) tACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGAACCAGCAgggt < 3:160228/107‑3 (MQ=255) cGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGt < 6:1200/149‑1 (MQ=255) tacGAGATGGCGACCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGaa > 8:233099/3‑137 (MQ=255) tacGAGATGGCGACCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGaa < 7:233099/135‑1 (MQ=255) tGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGTAGAACGGGTc > 2:210051/1‑149 (MQ=255) cGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGTAGAACGGGTCg < 3:296186/148‑1 (MQ=255) cGAGATGGCGACCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGTAGAACGGGTCGc > 8:116907/1‑149 (MQ=255) tCGCCTTCTCGTAGGCATGCACATTCAACCGCGAGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGTAGAACGGGTCGCTGATGTCg < 2:136187/149‑1 (MQ=255) | ATCAAAGACGGCACTGTCCTTCAGATCACGATCAAAGCGAACAGCTTCAGTCTCGT‑ACCCAAGGTTCAAACCGCCAGGCTGGAACGGCAGCGTACCGTTCAGGGTCAGCTGCGGCAGGCGATCATACGGCGT‑GATCTGCGAGATGGTCGCCATCTCGTAGGCATGCACATTCAACCGCGCGGTGTAGCTGTCGCCTCGGTAGGTCAACGCACCCTGCTGGTTCAGCAGGTCGCGGCTTTCCACGCCAATCTGGTCGGATTCCAGGTCCTGGAAGTAGAACGGGTCGCTGATGTCG > NC_002947/490870‑491164 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |