| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 36,174 | A→C | 19.2% | intergenic (+59/+24) | PP_0032 → / ← PP_0033 | hypothetical protein/undecaprenyl‑glycosyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 36,174 | 0 | A | C | 19.2% | 111.2 / 22.1 | 57 | intergenic (+59/+24) | PP_0032/PP_0033 | hypothetical protein/undecaprenyl‑glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (23/22); new base C (6/5); total (29/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
AGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGAT > NC_002947/36026‑36314 | aGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAATAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTaaaa < 1:116392/149‑1 (MQ=255) ctctTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCtt > 7:63621/1‑149 (MQ=255) tctTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCttt > 5:204954/1‑149 (MQ=255) tctTAGGACAAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAACGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGTCGGTTAAATAGGATTTCAAATGCCGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCttt > 2:255730/1‑149 (MQ=255) cGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCtttttt < 7:241291/148‑1 (MQ=255) cGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCtttttt < 8:63621/148‑1 (MQ=255) cAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCtt < 6:204954/149‑1 (MQ=255) aaacaaCAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAAtt > 1:64804/1‑149 (MQ=255) acaacaAGTCGCTCAAGAGCAAAAGAAAGAAAGAAAGGATGGTAAGTAACAATCCGACAATTAATCGGCTGTAAAATAGGACTTCAAAACACGAAAGAAATCGAAAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGAGCTTGGAAta > 1:47477/1‑146 (MQ=255) aaaacaaGTATCTAAAGAGCAAAAGAAATAAAGCAAGGATTGAAAGGAACAATCCGAAAATTAATCGGCGGTTAAATAGGATTTCAAATGACGAAATAAATCGNCAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTa < 1:255730/147‑1 (MQ=255) caaGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCt < 4:188465/149‑1 (MQ=255) gTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCtttttt > 7:316298/1‑128 (MQ=255) gTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCtttttt < 8:316298/128‑1 (MQ=255) cAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCTTTTTtgtc > 7:154592/1‑118 (MQ=38) cAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCTTTTTtgtc < 8:154592/119‑2 (MQ=38) aagaaagaaagCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGtt > 4:19968/1‑149 (MQ=255) gaaagCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCa < 7:257346/149‑1 (MQ=255) agCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCg > 3:256919/1‑125 (MQ=255) agCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCg < 4:256919/125‑1 (MQ=255) cAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGa > 3:351860/1‑111 (MQ=255) cAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGa < 4:351860/111‑1 (MQ=255) aGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGcc < 1:106009/148‑1 (MQ=255) aGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGc > 3:29957/1‑147 (MQ=255) aGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCa < 2:64804/149‑1 (MQ=255) aGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCa < 8:228239/149‑1 (MQ=255) gAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTa > 7:322028/1‑103 (MQ=255) gAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTa < 8:322028/103‑1 (MQ=255) aaGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCt > 5:109747/1‑149 (MQ=255) gCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGttt < 5:89895/120‑1 (MQ=255) gCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGttt > 6:89895/1‑120 (MQ=255) cGACAATTAATCGGCGGTTAAATAGGACTTCAAATAACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCgg > 6:56894/1‑148 (MQ=255) aTCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGc > 8:104505/1‑149 (MQ=255) ggcggTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCggg > 4:234536/1‑149 (MQ=255) ggcggTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCgg < 7:104505/148‑1 (MQ=255) gTTAAATATGACTTCAAATGACTATCGAAATCGCCAATAAAGCCAGCGCTAAACCTGGCTTTTTTGTGCTTGGATTTTCGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTCTGCGGGGCGt < 6:329041/149‑1 (MQ=255) aaaTAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGttt < 3:19968/148‑1 (MQ=255) tacgACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCaa < 3:121637/146‑1 (MQ=255) ggACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATg < 4:29957/149‑1 (MQ=255) ttCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGca > 2:223359/1‑148 (MQ=255) tGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAgg > 8:65543/1‑149 (MQ=255) gaaagaaaTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCAGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgct > 6:11129/1‑149 (MQ=255) aaTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgctggctg < 3:234536/148‑1 (MQ=255) aTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCtggctggc < 6:305064/149‑1 (MQ=255) tCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCg < 5:56894/149‑1 (MQ=255) caCAAAAAAGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGtt > 3:49990/2‑149 (MQ=255) aCAAAAAAGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGTGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGtt < 5:309440/148‑1 (MQ=255) aCAAAAAAGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAAATTAGCCTTCTTTCTTGCGAGGCGATTCCGCATTGCTTTATCCGGCCAGACAATCGGCAACTTTTGCGGGGCGTTTCCAATGGCACAGAAGGAGATGGCTGGCGtt > 6:309440/1‑148 (MQ=255) aaaaaaGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCTGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgctggctg < 7:239148/141‑1 (MQ=255) aaaaaaGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCTGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgctggctg > 8:239148/1‑141 (MQ=255) aaaaaaGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGc > 2:101136/1‑149 (MQ=255) aaaaGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGTTGGCTGGCGTTCGCtt > 8:296254/1‑149 (MQ=255) aaGCCATGGTAAATCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCTGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGGGTTCGCTTCg < 2:47477/149‑1 (MQ=255) aaGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCATTCGCtt > 2:319433/1‑147 (MQ=255) aaGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCATTCGCtt < 1:319433/147‑1 (MQ=255) gCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGt < 1:223359/149‑1 (MQ=255) cAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGa > 6:314028/1‑149 (MQ=255) aGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGAt > 8:334934/1‑149 (MQ=255) aGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGAATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCTGGGCGTTTCCAATGGCACAGCTGGAGCTGGCTGGCGTTCGCTTCGGTGAt > 7:258644/1‑149 (MQ=255) | AGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGAT > NC_002947/36026‑36314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |