| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 871,871 | A→G | 9.4% | intergenic (+17/+19) | PP_0755 → / ← PP_0756 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 871,871 | 0 | A | G | 9.4% | 140.3 / 5.6 | 53 | intergenic (+17/+19) | PP_0755/PP_0756 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (24/24); new base G (2/3); total (26/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.15e-01 | |||||||||||
TACATGGCAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCATTCTTCCTTGGCCTT > NC_002947/871729‑872018 | tACATGGCAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAg < 3:17428/149‑1 (MQ=255) ggCAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGcccc > 1:193256/1‑148 (MQ=255) gCAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGccc > 1:214930/1‑146 (MQ=255) gCAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGccc < 2:214930/146‑1 (MQ=255) cAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATTGGGGCTGCGTTGCAGccccgat < 4:31464/149‑4 (MQ=255) aCGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTGTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGAt < 4:341592/149‑1 (MQ=255) tAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTa > 3:267731/1‑147 (MQ=255) gTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAgg > 3:63093/1‑149 (MQ=255) gACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACAATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGc < 7:54312/149‑1 (MQ=255) cTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCctgc < 4:63093/149‑1 (MQ=255) ttCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCAGCAGGCACctgtag > 1:306930/1‑146 (MQ=255) cTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGcctgac > 5:300962/1‑149 (MQ=255) gggTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCAGCAGGCACCTGTAGcctgatcag < 2:306930/148‑5 (MQ=255) ggTGTCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGcctgacctga > 2:156616/1‑148 (MQ=255) gAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACGTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGt > 8:5757/1‑149 (MQ=255) gAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCGTTGCAGccccgat > 6:291391/1‑103 (MQ=255) gAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCGTTGCAGccccgat < 5:291391/106‑4 (MQ=255) aaTACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTg < 6:300962/149‑1 (MQ=255) aaTACTTCTACATCCTGGGCTGTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTg < 4:24211/149‑1 (MQ=255) gacgtCTACATGAAGGGCTTTGCGTGCGTGGTGATGGCGCTGCGGCTGTCCTGGTTCAGCAGCTGGGTCTGAGAACCTTCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGTCCTGATACTGGTTgcg < 8:161808/145‑1 (MQ=255) aCTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTg < 8:319246/142‑1 (MQ=255) aCTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTg > 7:319246/1‑142 (MQ=255) cTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGccc < 5:298198/96‑1 (MQ=255) cTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGccc > 6:298198/1‑96 (MQ=255) cTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCg > 1:13167/1‑148 (MQ=255) tGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAAc < 3:313485/90‑1 (MQ=255) tGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAAc > 4:313485/1‑90 (MQ=255) gggCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCa > 3:103742/1‑148 (MQ=255) cGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGcctg < 7:236255/110‑1 (MQ=255) cGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGcctg > 8:236255/1‑110 (MQ=255) gCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAacac > 2:332939/1‑148 (MQ=255) cTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCaa > 4:316525/1‑63 (MQ=255) cTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCaa < 3:316525/63‑1 (MQ=255) gCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGt < 1:332939/148‑1 (MQ=255) gATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACg < 2:193256/149‑1 (MQ=255) tGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGc < 3:346229/149‑1 (MQ=255) ggCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGcc > 7:333673/1‑149 (MQ=255) gctgctgctGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCgct < 4:267731/149‑1 (MQ=255) ctgctgTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGctc < 1:156616/149‑1 (MQ=255) gctgTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCtt > 4:121265/1‑149 (MQ=255) ctgTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGt < 7:75965/100‑1 (MQ=255) ctgTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGt > 8:75965/1‑100 (MQ=255) ccccgatGGTTCTCAGACCCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGAAACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATc > 4:286030/7‑149 (MQ=255) cTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGgc < 3:121265/149‑1 (MQ=255) gTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCg > 7:199115/1‑149 (MQ=255) gTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCACGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCg > 4:86873/1‑149 (MQ=255) tCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGt < 4:103742/149‑1 (MQ=255) cATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCAttct > 8:148633/1‑149 (MQ=255) cATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCAttct > 3:273563/1‑149 (MQ=255) aTCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAg < 2:204772/99‑1 (MQ=255) ttggggCTGCGTTGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGggca < 4:298659/120‑1 (MQ=255) ttggggCTGCGTTGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGggca > 3:298659/3‑122 (MQ=255) ggggCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCATTCTTcc < 7:5757/148‑1 (MQ=255) cAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCATTCTTccttggcctt > 6:181474/1‑149 (MQ=255) cAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCATTCTTccttggcc < 7:173958/147‑1 (MQ=255) | TACATGGCAGTAGACGAGGGGGTAGTGGACGCTTTCGAACTTCGGGTGCCGAAATACTTCTACATCCTGGGCTTTTCGTGCCTGGCGATGGCGCTGCTGCTGTCCTGGTTCAGCACCTGGGTCTGAGAACCATCGGGGCTGCAACGCAGCCCCAAACCTGATCAGGCTACAGGTGCCTGCTGCCTGACCTGATACTGGTTGCGCACCGGCGTCGCATACTGCAACACCAGGTACGGCCGCTGCTCTTGCGGGCAGGCATCCAGGCGCCGTTGCCATTCTTCCTTGGCCTT > NC_002947/871729‑872018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |