| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 886,941 | C→T | 6.9% | intergenic (+134/‑26) | PP_0767 → / → PP_0768 | LuxR family transcriptional regulator/TPR domain‑containing response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 886,941 | 0 | C | T | 6.9% | 165.4 / 2.6 | 58 | intergenic (+134/‑26) | PP_0767/PP_0768 | LuxR family transcriptional regulator/TPR domain‑containing response regulator |
| Reads supporting (aligned to +/- strand): ref base C (24/30); new base T (2/2); total (26/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
TTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGCTGACAGCGGC > NC_002947/886796‑887086 | ttGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAAt < 6:285753/149‑1 (MQ=255) cTGGCGTGATACTGGCCCTGTCGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCa < 5:322488/148‑1 (MQ=255) tGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCAtt > 5:93360/1‑149 (MQ=255) ggCGGGATAGTGGCCCTGTAGGGCATTGCTCGTTCACGTGAGGGCCTGACGCCATATTCTCTGGCCGACAAGGCTCTCCCCTCCTCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTc < 8:152967/149‑1 (MQ=255) gCGTGATACTGGCCCTGTAGGTCATTGGTCTTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACTGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCAtt < 2:93859/147‑1 (MQ=255) cTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAg < 1:318996/148‑1 (MQ=255) cTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATCCAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCgtgt < 7:7184/149‑1 (MQ=255) gTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTTAATCATTCCAAGGCAGGTCGTGtt > 3:45106/1‑148 (MQ=255) gTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTTAATCATTCCAAGGCAGGTCGTGtt > 3:49821/1‑148 (MQ=255) gTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGTATCGCCTCGCGCGTTTTTTCAATCATTCCAAGGCAGGTCGTGTTGAtgc < 1:233013/149‑1 (MQ=255) gTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGAtgc > 7:45482/1‑149 (MQ=255) ttGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTTAATCATTCCAAGGCAGGTCGTGTTGATGCTGCa < 4:49821/149‑1 (MQ=255) ttGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGAtgctg > 4:218764/1‑147 (MQ=255) ttGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCa < 2:62704/149‑1 (MQ=255) tggCTCGGTAAAGTGATGGCCTGACGCCATATTATCTCGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTTAATCATTCCAAGGCAGGTCGTGTTGATGCTGCa < 4:45106/147‑1 (MQ=255) cTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTa > 3:289347/1‑149 (MQ=255) tctttAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCCCCTCGCGCGATTTTTCAATCATTCAAAGGCAGGTCGTGTTGATGCTGCAGTAc > 5:105323/4‑149 (MQ=255) ttAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACggg > 3:292836/1‑149 (MQ=255) gTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCaa > 6:269891/1‑147 (MQ=255) tGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAgg < 5:39662/120‑1 (MQ=255) tGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAgg > 6:39662/1‑120 (MQ=255) tGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCaa > 4:121669/1‑146 (MQ=255) tGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAag < 4:289347/149‑1 (MQ=255) gCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCt < 5:269891/148‑1 (MQ=255) gCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGAt < 1:68265/118‑1 (MQ=255) gCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGAt > 2:68265/1‑118 (MQ=255) cATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGAtcgt > 6:71881/1‑149 (MQ=255) atatTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGAtcgtc < 6:93360/149‑1 (MQ=255) attatCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTcga > 6:53859/1‑149 (MQ=255) cTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTc > 2:93514/1‑134 (MQ=255) cTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTc < 1:93514/134‑1 (MQ=255) gCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACt < 3:121669/146‑1 (MQ=255) ccGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTAc < 6:84756/149‑1 (MQ=255) aCAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGa < 5:6102/149‑1 (MQ=255) tGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACttt < 5:53859/149‑1 (MQ=255) ccTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTc < 4:292836/149‑1 (MQ=255) tCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGa > 4:31929/1‑149 (MQ=255) cATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGAc > 4:311560/1‑149 (MQ=255) cTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTcgac < 2:327453/120‑1 (MQ=255) cTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTcgac > 1:327453/1‑120 (MQ=255) ttCCCGACCAGCTGCCGAGACAGCTATCGGTGGCATCGCCGCGCGCGATTTTTCAATCATGCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAACGAGCTTTCTGATCGTCGACGACGGTACCGCCTGTCGTACGGCGCCCCGtt > 5:302941/1‑149 (MQ=255) ccGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCa > 7:325753/1‑149 (MQ=255) ccGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCa > 7:306456/1‑149 (MQ=255) gCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTgcg > 4:103562/1‑149 (MQ=255) cGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCACGTCgcgcacgc < 8:306456/149‑5 (MQ=255) gATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGtt > 2:192385/1‑149 (MQ=255) cAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGc < 3:311560/149‑1 (MQ=255) aGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACttt > 2:307396/1‑112 (MQ=255) aGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACttt < 1:307396/112‑1 (MQ=255) aTCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTg < 1:237689/147‑1 (MQ=255) aTCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTg > 2:237689/1‑147 (MQ=255) cgcgcgATTTTTCAATCATTCCAAGGCAGGGCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGCt < 3:31929/149‑1 (MQ=255) gcgcgATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTTGACACCGCt < 8:45482/148‑1 (MQ=255) gcgcgATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGGCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGc < 3:218764/147‑1 (MQ=255) cgATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGCTGACa < 1:51762/149‑1 (MQ=255) tgtttCAATCATTCCACGGCAGGTCGTGGTTCTGCTGGAGTACGGGCACAAGCGCGTTCTGATCGGCGACGACTTTCCCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGCGTGGGGCGTGCGCGACGTGGACACCGCTGACAgc < 6:302941/146‑1 (MQ=255) tttCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGCTGACAgcggc > 5:139022/1‑149 (MQ=255) ttCAATCATTGCAAGGCATGTCGTGTTGATGCTGCAGTACGGGCAAAATAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGCTGACAgcggc < 6:105323/148‑1 (MQ=255) | TTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCTGCCGATACAGCTATCGGTGGCATCGCCTCGCGCGATTTTTCAATCATTCCAAGGCAGGTCGTGTTGATGCTGCAGTACGGGCAAAAGAGCTTTCTGATCGTCGACGACTTTACCGACTTTCGTACGTCGACCCGTTCCATGTTGCGCGAGTTGGGCGTGCGCGACGTGGACACCGCTGACAGCGGC > NC_002947/886796‑887086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |