Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 901,420 | T→C | 12.7% | intergenic (‑139/‑192) | cysZ ← / → trxB | sulfate transport protein CysZ/thioredoxin reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 901,420 | 0 | T | C | 12.7% | 134.2 / 10.7 | 55 | intergenic (‑139/‑192) | cysZ/trxB | sulfate transport protein CysZ/thioredoxin reductase |
Reads supporting (aligned to +/- strand): ref base T (23/25); new base C (4/3); total (27/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.05e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.80e-01 |
GGCTTGCATCTAGAGACTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTTGGCTGGCGC > NC_002947/901273‑901562 | ggCTTGCATCTAGAGACTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATg > 6:39763/1‑149 (MQ=255) cATCTAGAGACTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTAt < 5:128865/148‑1 (MQ=255) aTCTAGAGACTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTAt > 3:326787/1‑147 (MQ=255) gagaCTCCGCAGAGAAGGAAACCGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCATCGCCTATgctg < 3:118678/146‑4 (MQ=255) gagaCTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGt < 6:241378/147‑1 (MQ=255) gagaCTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTgg < 7:44170/149‑1 (MQ=255) gagaCTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTg > 8:44170/1‑148 (MQ=255) gagaCTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCATCGCCTATgct < 7:261500/145‑3 (MQ=255) aCTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGAtt < 7:55881/149‑1 (MQ=255) tCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGt > 5:90810/1‑149 (MQ=255) cGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTc < 5:267761/148‑1 (MQ=255) cAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTaa < 6:90810/149‑1 (MQ=255) agagAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGTGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTaa < 8:211637/148‑1 (MQ=255) agagAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCt > 7:211637/1‑146 (MQ=255) gAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCGTATGAGGTGGATTGTCTAAGGATAttt > 7:163396/1‑149 (MQ=255) gAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATAttt < 6:351212/149‑1 (MQ=255) gAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATAttt > 4:140049/1‑149 (MQ=255) aCGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTg > 6:173547/1‑127 (MQ=255) aCGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTg < 5:173547/127‑1 (MQ=255) aCCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCttt < 3:140049/148‑1 (MQ=255) cTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGc < 1:231624/148‑1 (MQ=255) cTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGc > 2:231624/1‑148 (MQ=255) cTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCg > 5:169353/1‑149 (MQ=255) cgacgaAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACACTGCGCt > 1:187191/1‑148 (MQ=255) gaAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACt > 5:211333/1‑149 (MQ=255) gCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTc > 3:106306/1‑148 (MQ=255) gCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCttt > 7:241791/1‑149 (MQ=255) gTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCg < 5:39763/149‑1 (MQ=255) ggAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTgc < 8:241791/149‑1 (MQ=255) gAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTTCAGTGCGCTCAACTTTTCGCTTTGCGGGCCTgcg < 8:212104/149‑1 (MQ=255) aaCGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTc > 4:266636/1‑79 (MQ=255) aaCGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTc < 3:266636/79‑1 (MQ=255) gggATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACACTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGttt < 2:187191/149‑1 (MQ=255) aaCAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCttt < 1:78447/126‑1 (MQ=255) aaCAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCttt > 2:78447/1‑126 (MQ=255) aaCAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCttt > 2:73453/1‑126 (MQ=255) aaCAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCttt < 1:73453/126‑1 (MQ=255) aaCAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACATCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTGTTAGCCtt > 6:174559/1‑149 (MQ=255) aaGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTcccc > 1:330593/1‑148 (MQ=255) ccGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGtgct < 2:330593/149‑1 (MQ=255) ttGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTggg < 4:326787/149‑1 (MQ=255) ttATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCt > 3:17032/1‑149 (MQ=255) aTGAAATCGCAGCATACGCGATGCCTATGAGGTGGAATGTCTAAGGATAATTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACATTTAGCTTTGCGGGCCTGCGCGTTTTAGCCTTCACCAAGTGCTCCGTGGGTCCTTTTTaa > 1:49914/1‑149 (MQ=255) aTCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCt > 4:33430/1‑149 (MQ=255) gcagcaTAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtgg < 6:169353/149‑1 (MQ=255) cctcaTAGGCATCGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTc > 2:196241/4‑113 (MQ=255) cctcaTAGGCATCGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTc < 1:196241/110‑1 (MQ=255) ctcaTAGGCATCGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggct > 1:348936/3‑149 (MQ=255) agcaTAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggct < 6:211333/149‑1 (MQ=255) tcaTAGGCATCGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggctg > 6:234495/2‑149 (MQ=255) caTAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggc > 2:344944/1‑146 (MQ=255) caTAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggc < 1:344944/146‑1 (MQ=255) caTAGGCATCGCCTATGAGGTGGATTGTCTATGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggatgg > 3:197960/1‑149 (MQ=255) aTAGGCTATGCCTATGATGTGGATTGTCTAAGGATATTTCCTTAATCTTTGGGACCTGGCTACTGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTtggctggc < 2:49914/149‑1 (MQ=255) ggCGATGCCTATGAGGTGGATTGTCTAACGATATTTCCTTAATCTTTGCGACCTCGCTACACTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGGCCTTTTTAATTTCTTGGCGGgcgc < 4:316797/148‑1 (MQ=255) | GGCTTGCATCTAGAGACTCCGCAGAGAAGGAAAACGCGCTGACCTTACCGAGTTTGCCGCGCCGACGAAAGGCACGCCGTGGGCGGGAAACGGGATGTAACAAAAGCGCCCGGGGCTTGTTTATCGATGAAATCGCAGCATAGGCGATGCCTATGAGGTGGATTGTCTAAGGATATTTCCTTAATCTTTGCGACCTCGCTACAGTGCGCTCAACTTTTCGCTTTGCGGGCCTGCGCGTTTTAGCCTTCCCCAAGTGCTGCGTGGGTCCTTTTTAATTTCTTGGCTGGCGC > NC_002947/901273‑901562 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |