Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,004,355 | A→T | 7.3% | N127I (AAT→ATT) | PP_0866 → | transmembrane sensor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,004,355 | 0 | A | T | 7.3% | 166.4 / 3.1 | 55 | N127I (AAT→ATT) | PP_0866 | transmembrane sensor |
Reads supporting (aligned to +/- strand): ref base A (27/24); new base T (2/2); total (29/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 |
CGGCCAGACCCGGTGCAGCAACTGCCACGACGGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGTAACCGG > NC_002947/1004207‑1004503 | cGGCCAGACCCGGTGCAGCAACTGCCACGACGGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCaa < 7:36788/149‑1 (MQ=255) gcaACTGCCACGACGGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCGCTCATTGAAGGCCGTctgca < 5:223621/147‑5 (MQ=255) gcaACTGCCACGACGGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCGCTCATTGAAGGCCGTctgca > 6:223621/1‑143 (MQ=255) cACGACGGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCg < 3:237213/149‑1 (MQ=255) acgacgGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCgg < 7:116343/149‑1 (MQ=255) ggCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGc < 6:216492/149‑1 (MQ=255) gCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGTGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCt < 1:272484/149‑1 (MQ=255) tttCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGc < 7:286162/149‑1 (MQ=255) cgcCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTg > 5:270868/1‑147 (MQ=255) cgcCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGa < 5:102324/149‑1 (MQ=255) cAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCGCTCATTGAAGGCCGTctgca > 5:151781/1‑115 (MQ=255) cAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCGCTCATTGAAGGCCGTctgca < 6:151781/119‑5 (MQ=255) gTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATg < 8:272239/149‑1 (MQ=255) ttGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATgg > 6:263521/1‑149 (MQ=255) ggCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGt > 6:272747/1‑111 (MQ=255) ggCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGt < 5:272747/111‑1 (MQ=255) ggCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGc > 1:35409/1‑148 (MQ=255) ccAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACg > 2:232852/1‑149 (MQ=255) aGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCa < 2:35409/149‑1 (MQ=255) cgGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAg > 1:165433/1‑149 (MQ=255) ggCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGt > 4:231222/1‑149 (MQ=255) gggcctgggcTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAgg < 6:314027/137‑1 (MQ=255) gggcctgggcTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAgg > 5:314027/1‑137 (MQ=255) cctgggcTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCg > 1:36998/1‑149 (MQ=255) tgggcTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTg > 2:316886/1‑128 (MQ=255) tgggcTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTg < 1:316886/128‑1 (MQ=255) gAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGc < 1:232852/149‑1 (MQ=255) gAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGc < 5:263521/149‑1 (MQ=255) caccTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGaa > 7:58854/1‑149 (MQ=255) tGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCt > 4:351170/1‑149 (MQ=255) aCTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTg < 2:270268/139‑1 (MQ=255) aCTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTg > 1:270268/1‑139 (MQ=255) cTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTg > 6:360689/1‑148 (MQ=255) aaCCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGt > 2:80727/1‑149 (MQ=255) tCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGt > 7:252689/1‑149 (MQ=255) aGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGc < 4:2952/110‑1 (MQ=255) aGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGc > 3:2952/1‑110 (MQ=255) ggCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAg > 3:55608/1‑149 (MQ=255) ggCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAg > 8:50249/1‑149 (MQ=255) ggCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAg < 3:231222/149‑1 (MQ=255) gCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGc < 6:270868/149‑1 (MQ=255) cTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGc > 2:248575/1‑149 (MQ=255) cTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGc < 4:55608/149‑1 (MQ=255) tGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGt > 4:279169/1‑145 (MQ=255) tGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGt < 3:279169/145‑1 (MQ=255) aGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCAt < 1:248575/149‑1 (MQ=255) aCGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGa > 1:310440/1‑149 (MQ=255) cGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGa < 5:360689/148‑1 (MQ=255) ggCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACa < 8:58854/149‑1 (MQ=255) ggCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACa < 3:351170/149‑1 (MQ=255) cTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGt > 5:243362/1‑148 (MQ=255) cTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGt > 8:136861/1‑148 (MQ=255) cTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGt > 6:171026/1‑148 (MQ=255) cTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGt > 4:253597/1‑148 (MQ=255) tCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGTAAc > 8:145091/1‑149 (MQ=255) cAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGTAAc < 7:145091/148‑1 (MQ=255) aaTGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGTAACCg > 7:292797/1‑149 (MQ=255) aTGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGTAACCgg > 8:287336/1‑149 (MQ=255) | CGGCCAGACCCGGTGCAGCAACTGCCACGACGGCGTTTCATGCGCCAGGCGTTGGCCGCCAGTGTCGCGGTAGTGGCGCTGGGCCTGGGCTGGAGCGGCTGGCACCACCTGCAACTGAACCATCAGGGCAGCCTGCAGACGGCCTTCAATGAGCGCCGTCAGGTCGAACTGCCGGATGGCTCGCATCTGGAGCTCAATGGCAACACGCAGTTGCAGGTCGAGTTCAGCGCCGGCCAGCGGCACGTGCGCCTGAACGCTGGTGAAGTGATGTTCAGCGTCGCCCATGACAGTAACCGG > NC_002947/1004207‑1004503 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |