Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,100,209 | G→C | 11.5% | V132V (GTG→GTC) ‡ | mlaF → | ABC transporter ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,100,209 | 0 | G | C | 11.5% | 142.5 / 10.3 | 52 | V132V (GTG→GTC) ‡ | mlaF | ABC transporter ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (22/24); new base C (3/3); total (25/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01 |
CCGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATG > NC_002947/1100062‑1100353 | ccGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTgg > 4:291860/1‑149 (MQ=255) ccGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTgg > 2:16440/1‑149 (MQ=255) gATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCCACGGCCTgcagc < 8:130853/149‑4 (MQ=255) gATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCCACGGCCTgca < 5:306272/147‑2 (MQ=255) gATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCCACGGCCTgca > 6:306272/1‑146 (MQ=255) cAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGGGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGAt < 3:213393/149‑1 (MQ=255) cAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGa > 1:100388/1‑143 (MQ=255) cAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGa < 2:100388/143‑1 (MQ=255) agagCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTGAGCTGGCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATg < 5:33749/149‑1 (MQ=255) ccccGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCg > 6:196022/3‑149 (MQ=255) aCCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTg < 8:172206/144‑1 (MQ=255) aCCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTg > 7:172206/1‑144 (MQ=255) ccGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGt > 7:285221/1‑149 (MQ=255) cGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTg > 4:215486/1‑149 (MQ=255) ccTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCa > 2:92000/1‑149 (MQ=255) tCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGTCTGCGCGGTGCCATCGACCTGATGCCCGACGAg < 8:321529/134‑1 (MQ=255) tCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGTCTGCGCGGTGCCATCGACCTGATGCCCGACGAg > 7:321529/1‑134 (MQ=255) gATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGGGCATACTCAGCTGGCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑aa < 5:61744/149‑1 (MQ=255) gtTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGcc > 2:95811/1‑149 (MQ=255) gtTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGcc > 6:14517/1‑149 (MQ=255) ttCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTg < 2:85134/136‑1 (MQ=255) ttCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACAAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTg > 1:85134/1‑136 (MQ=255) cGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCTCCgt < 8:59844/148‑1 (MQ=255) agtaCGTCGCGTTCCCGTTGCGCGTGCATACTCAGGTCGCGGACCAAATGATCCGTGACTTGGTGTTGATGACGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCTtgtg < 2:288889/146‑1 (MQ=255) aaCGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGgc < 2:294003/149‑1 (MQ=255) cGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATg < 3:70663/133‑1 (MQ=255) cGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATg > 4:70663/1‑133 (MQ=255) tCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGc < 7:291878/128‑1 (MQ=255) tCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGc > 8:291878/1‑128 (MQ=255) ttGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAAGCGCCGTGTGGCGCTGGCCCGGGCGa < 1:16440/149‑1 (MQ=255) cgTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGccc < 1:95811/149‑1 (MQ=255) gTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCt < 1:92000/149‑1 (MQ=255) gCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCcga > 8:329743/1‑93 (MQ=255) gCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCcga < 7:329743/93‑1 (MQ=255) gCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTg < 5:314488/139‑1 (MQ=255) gCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTg > 6:314488/1‑139 (MQ=255) tCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATc < 5:196022/147‑1 (MQ=255) tCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATc < 5:14517/147‑1 (MQ=255) gACGAAATGATCCCTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCCGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGCCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCAt > 4:286310/1‑149 (MQ=255) aTCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTc < 6:72158/138‑1 (MQ=255) aTCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTc > 5:72158/1‑138 (MQ=255) gTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCg > 2:33571/1‑149 (MQ=255) aTCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATc < 6:359328/126‑1 (MQ=255) aTCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATc > 5:359328/1‑126 (MQ=255) tgtTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGc > 2:170804/1‑149 (MQ=255) caccgcgCAGGCCCACGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGAcc > 3:264230/7‑149 (MQ=255) gCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGa > 1:215343/1‑149 (MQ=255) cgcgCAGGCCCACGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTtcgtc < 6:369923/133‑1 (MQ=255) cgcgCAGGCCCACGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTtcgtc > 5:369923/4‑136 (MQ=255) tGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATc > 3:293736/1‑149 (MQ=255) ggCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTtc > 3:99768/1‑127 (MQ=255) ggCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTtc < 4:99768/127‑1 (MQ=255) ccGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATg < 3:215486/149‑1 (MQ=255) ccGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATg < 1:33571/149‑1 (MQ=255) | CCGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATG‑AAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATG > NC_002947/1100062‑1100353 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |