Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,234,328 | T→A | 7.0% | I320F (ATC→TTC) | glpK ← | glycerol kinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,234,328 | 0 | T | A | 7.0% | 163.9 / 2.9 | 57 | I320F (ATC→TTC) | glpK | glycerol kinase |
Reads supporting (aligned to +/- strand): ref base T (28/24); new base A (2/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.84e-01 |
GCCACGTGTCAGGCCGAACAACGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCACCGCCTGGTCGCCCGTGT > NC_002947/1234182‑1234471 | gCCACGTGTCAGGCCGAACAACGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATc > 3:217601/1‑148 (MQ=255) ccACGTGTCAGGCCGAACAACGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCtt > 4:71576/1‑149 (MQ=255) gAACAACGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAg < 6:279293/138‑1 (MQ=255) gAACAACGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAg > 5:279293/1‑138 (MQ=255) aacaacGCACCACGGGCATACGGGTCCCAGTACGGGGCACACAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAg > 5:202069/1‑149 (MQ=255) aacGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGAACTGAAGATCGTCaa < 2:35908/142‑2 (MQ=255) aacGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGAACTGAAGATCGTCaa > 1:35908/1‑141 (MQ=255) acGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCAt > 5:329303/1‑149 (MQ=255) accacGGGCACACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGGCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCa < 7:337880/149‑1 (MQ=255) cacGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACg > 6:21963/1‑149 (MQ=255) cGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGt < 2:296774/149‑1 (MQ=255) gCATACGGGTCCCAGTACGGGGCACCCAGGCCGTTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTAGGTATCCAGGGAGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTagc > 3:300405/1‑148 (MQ=255) tACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGcc > 1:173567/1‑149 (MQ=255) cGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTaga < 4:152482/144‑1 (MQ=255) cGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTaga > 3:152482/1‑144 (MQ=255) gggTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGccac > 6:106563/1‑148 (MQ=255) gTCCCAGTACGGGTCACCCAGGCCTGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCAt < 4:300405/149‑1 (MQ=255) ccAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTg > 7:157321/1‑148 (MQ=255) cAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGaa > 3:270663/1‑149 (MQ=255) gCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATTTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGcc > 1:318562/1‑149 (MQ=255) cACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCt < 3:71576/149‑1 (MQ=255) cccAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTc < 2:173567/149‑1 (MQ=255) cAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCa < 5:21963/149‑1 (MQ=255) aGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAg > 1:116371/1‑149 (MQ=255) ggCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGt < 6:329303/149‑1 (MQ=255) cGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCtt < 4:292380/88‑1 (MQ=255) cGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCtt > 3:292380/1‑88 (MQ=255) ggTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTa > 1:291717/1‑115 (MQ=255) ggTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTa < 2:291717/115‑1 (MQ=255) gttaaGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTa < 6:265113/111‑1 (MQ=255) gTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATTTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATa < 2:318562/149‑1 (MQ=255) gTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTa > 5:265113/1‑114 (MQ=255) cTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATa < 4:164731/142‑1 (MQ=255) cTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATa > 3:164731/1‑142 (MQ=255) aCCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTcac > 3:34414/1‑148 (MQ=255) gTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCCCGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCAcgcg > 7:272655/1‑149 (MQ=255) cacGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGc < 2:116371/149‑1 (MQ=255) gCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGAGCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCaa > 4:58787/1‑149 (MQ=255) tCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCATGCGGGCCGCAGGCAATg < 4:270663/147‑1 (MQ=255) tCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATg < 4:34414/147‑1 (MQ=255) tacTTGCTGGCGATATACTCGGTATAGAGGGCGTAGTTGACGATCTTCAGTTCGTCAAGGAGCCATTGCACGGTAGATTAACCATTGAATAACGCGCCTTCCTTTGCATAGGCCACCTCTCCACGCGGGACTCAGGCAATTGTCGTGa < 4:217601/146‑1 (MQ=255) aCCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCTATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAg > 6:45402/1‑149 (MQ=255) aCCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAg < 8:157321/149‑1 (MQ=255) gCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTg < 5:106563/149‑1 (MQ=255) gAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTgg > 6:145328/1‑148 (MQ=255) aaaTACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGga > 4:103903/1‑149 (MQ=255) gTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAg > 2:298321/1‑90 (MQ=255) cAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCgg > 5:31705/1‑102 (MQ=255) cAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCgg < 6:31705/102‑1 (MQ=255) ggCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCACCGCCTGGt < 5:145328/149‑1 (MQ=255) tgcgtGACGAACTGAAGATCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTgg > 8:143784/5‑126 (MQ=255) tgcgtGACGAACTGAAGATCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTgg < 7:143784/122‑1 (MQ=255) gtTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCACCGCCTGGTCGCCCg > 7:315755/1‑149 (MQ=255) gACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCACCGCCTGGTCGCCCgtgt > 1:134062/1‑149 (MQ=255) aCGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCAcc > 7:38176/1‑132 (MQ=255) aCGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCAcc < 8:38176/132‑1 (MQ=255) gATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGt < 3:338400/105‑1 (MQ=255) | GCCACGTGTCAGGCCGAACAACGCACCACGGGCATACGGGTCCCAGTACGGGGCACCCAGGCCGGTAAAGGCTGGCACCAGGTACACGCCATTGCTGTCCTTGACCTTGCTGGCGAAATACTCGGTATCCAGGGCGTCGTTGACGATCTTCAGTTCGTCACGCAGCCATTGCACGGTAGAGCCACCATTGAATACCGCGCCTTCCAGTGCATAGGCCACCTCACCACGCGGGCCGCAGGCAATGGTCGTGAGCAGGCCGTGGGACGACTTCACCGCCTGGTCGCCCGTGT > NC_002947/1234182‑1234471 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |