Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,266,910 | G→C | 8.6% | R360G (CGC→GGC) | quiP ← | acyl‑homoserine lactone acylase QuiP |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,266,910 | 0 | G | C | 8.6% | 162.7 / 5.1 | 56 | R360G (CGC→GGC) | quiP | acyl‑homoserine lactone acylase QuiP |
Reads supporting (aligned to +/- strand): ref base G (25/25); new base C (3/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.90e-01 |
GATCACCTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCA > NC_002947/1266772‑1267053 | gATCACCTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGcc > 8:245655/1‑149 (MQ=255) gATCACCTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGcc > 4:179288/1‑149 (MQ=255) gATCACCTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGcc > 5:344719/1‑149 (MQ=255) gATCACCTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGcc < 2:236281/149‑1 (MQ=255) cTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGc > 2:187699/1‑149 (MQ=255) cTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCCGGCCCGCGCCCGCAGc < 4:5347/149‑1 (MQ=255) cTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTAc > 6:216545/1‑149 (MQ=255) gggCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTAcc > 5:204161/1‑147 (MQ=255) gggCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTAcc < 6:204161/147‑1 (MQ=255) gggCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCAt > 2:283638/1‑149 (MQ=255) gCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCg > 2:267738/1‑149 (MQ=255) gCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGGGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCg < 2:175568/149‑1 (MQ=255) gCAGGTGCCGCGCCAGGCCCAGCCTGGGGTTTTCGGGCGGGCCCAGCAGGGGGCCGGGGCGGGGGTCGTACCTCACTTCGCGCACGGGGCGTTGCCCACGTACAAAGTTGGTTTCGCTGCGGGCGCGGGCGGGCAGCCATTTACCATCg < 6:293738/149‑1 (MQ=255) gaGGTTCAGCGCCAGGCACAGGCTTGCGTTTTCTGGCTGGGCCAGCAGGGTGGCGTGGCTGGTGTAGTTCATCACTTAGCGCACGGGGCGTTGGCCACGTACATAGTAGGTTTCGGTTCTGGCGAGGGCCGTCAGCCATTTACGATCgg < 6:229804/148‑1 (MQ=255) ggTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGcc < 1:283638/149‑1 (MQ=255) gTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGTGTGCCGTGGCGGGAGTAGTACATCACTTCGCGCACGGGGCGTTGGCGACGTGCAAAGGAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATATACCCTGGGc > 6:207905/1‑147 (MQ=255) gcgcCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑g < 1:267738/149‑1 (MQ=255) gcCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCt < 3:168373/149‑1 (MQ=255) caggcTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATGTACCATCGGCCAGGTA‑GCTCAGCTgcc > 6:303376/1‑147 (MQ=255) caggcTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCCGGCCCGCGCCCGCa < 5:38004/116‑1 (MQ=255) caggcTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCCGGCCCGCGCCCGCa > 6:38004/1‑116 (MQ=255) gcTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCTCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTTACTGc < 4:244608/149‑1 (MQ=255) gTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTggc > 2:244322/1‑149 (MQ=255) gTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTggc < 3:250593/149‑1 (MQ=255) ttttCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTggcg > 5:140113/1‑149 (MQ=255) ggCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAgctg < 1:244322/147‑1 (MQ=255) gCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTc > 3:202947/1‑149 (MQ=255) gTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑g < 3:196675/149‑1 (MQ=255) gTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑g < 2:114031/149‑1 (MQ=255) ccGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTc < 3:179288/149‑1 (MQ=255) ccGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTc > 3:340236/1‑149 (MQ=255) ccGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTc < 4:340236/149‑1 (MQ=255) ggCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGa < 4:202947/149‑1 (MQ=255) gCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGAt > 2:273046/1‑149 (MQ=255) tgtCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCg < 5:216545/149‑1 (MQ=255) tgtCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCg < 6:140113/149‑1 (MQ=255) gtCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGa < 2:155180/142‑1 (MQ=255) gtCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGa > 1:155180/1‑142 (MQ=255) tCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGc > 8:138657/1‑149 (MQ=255) aTCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGAc < 1:187699/149‑1 (MQ=255) aCTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACcgc > 5:197664/1‑149 (MQ=255) ggCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAg < 7:245655/149‑1 (MQ=255) ccACGTACAAAGTAGGTTTCGCTGCGTGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTc < 5:368412/116‑1 (MQ=255) ccACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTc > 6:368412/1‑116 (MQ=255) ccACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCtt < 7:138657/149‑1 (MQ=255) tACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTATACTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCa > 1:98363/1‑149 (MQ=255) aCAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCAtt > 3:221494/1‑149 (MQ=255) aaGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACACGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGt < 1:273046/149‑1 (MQ=255) aGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAg > 1:217198/1‑149 (MQ=255) tAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGcc > 1:106434/1‑149 (MQ=255) ggTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCgg < 4:221494/149‑1 (MQ=255) tttCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGc > 8:134645/1‑148 (MQ=255) ttCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGc > 1:330833/1‑147 (MQ=255) gCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGca < 6:197664/149‑1 (MQ=255) gCTGCCGGCCCGCGCCCGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGca > 6:13023/1‑149 (MQ=255) cTGCCGGCCCGCGCCCGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGca > 3:350549/1‑148 (MQ=255) | GATCACCTTTGAACTGGGGCAGGTTCAGCGCCAGGCCCAGGCTGGCGTTTTCTGGCTGGGCCAGCAGGGTGCCGTGGCGGGTGTCGTACATCACTTCGCGCACGGGGCGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTA‑GCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACA‑GGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCA > NC_002947/1266772‑1267053 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |