| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 68,340 | G→T | 8.7% | intergenic (+28/+147) | PP_0057 → / ← PP_0058 | major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 68,340 | 0 | G | T | 8.7% | 192.9 / 4.6 | 65 | intergenic (+28/+147) | PP_0057/PP_0058 | major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (30/29); new base T (3/3); total (33/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATACCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATCCA > NC_002947/68197‑68479 | ataCCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTaaaa > 5:278767/1‑149 (MQ=255) tatCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGttttt > 5:126339/1‑149 (MQ=255) tctACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTTTTACAGCCGGTTTTTTTAt < 1:68915/148‑1 (MQ=255) tctACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTTTTACAGCCGGTTTTTTTAt > 2:68915/1‑148 (MQ=255) ctACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTa < 6:98191/146‑1 (MQ=255) cGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGc < 2:121678/146‑1 (MQ=255) gggCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTaaaa > 4:253835/1‑129 (MQ=255) gggCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTaaaa < 3:253835/129‑1 (MQ=255) tgGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCaaaaaaa > 7:319439/1‑149 (MQ=255) tgGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCaaaaaaa < 7:176464/149‑1 (MQ=255) gTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACt > 1:343343/1‑149 (MQ=255) gTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCACAAAAAAACt > 5:22907/1‑149 (MQ=255) aCCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTTTTACAGCCGGttttttt > 4:73396/1‑131 (MQ=255) aCCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTTTTACAGCCGGttttttt < 3:73396/131‑1 (MQ=255) ggTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGc > 4:91232/1‑148 (MQ=255) ggTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGc < 3:91232/148‑1 (MQ=255) tGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGTTTTTTTTATGCCTCAAAAAAACTTATGCACGAtt > 5:352202/1‑149 (MQ=255) tGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCt > 3:181999/1‑128 (MQ=255) tGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCt < 4:181999/128‑1 (MQ=255) tGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTGTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTc < 6:352202/149‑1 (MQ=255) gACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGttt < 2:329958/114‑1 (MQ=255) gACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGttt > 1:329958/1‑114 (MQ=255) cGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGaa < 6:22907/149‑1 (MQ=255) cGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGa > 3:218973/1‑148 (MQ=255) gCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCa > 1:57980/1‑149 (MQ=255) gCCTGGTGGTTGGCATCTTATGTCTGAGTGAAACCAAGTATTTAGATATCGACAATGTCTGATGTCCACATGCCTTAAAAAAACCGGCTTTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTc < 7:65779/148‑1 (MQ=255) ccTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCaaaaaa > 7:211176/1‑119 (MQ=255) ccTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCaaaaaa < 8:211176/119‑1 (MQ=255) ccTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCAt < 4:218973/149‑1 (MQ=255) gggATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAAATCATACAAAGaaa > 1:301256/1‑148 (MQ=255) ggATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTc < 8:307349/125‑1 (MQ=255) ggATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTc > 7:307349/1‑125 (MQ=255) ggATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAAt < 6:278767/148‑1 (MQ=255) ctgtctgAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTa < 2:343343/146‑1 (MQ=255) ctgtctgAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAg < 2:113841/147‑1 (MQ=255) gagagaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATaa > 1:104894/1‑137 (MQ=255) gagagaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATaa < 2:104894/137‑1 (MQ=255) agagaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAg < 5:201435/140‑1 (MQ=255) agagaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAg > 6:201435/1‑140 (MQ=255) agagaAACCAAGGATGTAGATATCGACAAAGTCTGATGTACACATTCCATAAAAAAACCTGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAAtt < 5:337797/146‑1 (MQ=255) gagaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGACTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCAt > 7:65158/1‑148 (MQ=255) ccAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAg < 5:129841/133‑1 (MQ=255) ccAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAg > 6:129841/1‑133 (MQ=255) aaGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACt > 8:240437/1‑145 (MQ=255) gATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGatat < 7:240437/149‑1 (MQ=255) aGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAAt > 2:204806/1‑148 (MQ=255) tCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATAc < 6:137472/104‑1 (MQ=255) tCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATAc > 5:137472/1‑104 (MQ=255) gACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCAt > 1:70377/1‑149 (MQ=255) cAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCAtt > 3:223823/1‑148 (MQ=255) aaGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTaa < 2:57980/149‑1 (MQ=255) aGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAGAGAAATAACTAGCAAATTCATACACTTAGATATCAATTc > 4:167139/1‑138 (MQ=255) aGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAGAGAAATAACTAGCAAATTCATACACTTAGATATCAATTc < 3:167139/138‑1 (MQ=255) gTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATc < 6:103904/149‑1 (MQ=255) gTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATc < 6:126339/149‑1 (MQ=255) tCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGaaa > 2:229371/1‑102 (MQ=255) tCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGaaa < 1:229371/102‑1 (MQ=255) aTGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGa > 2:253211/1‑123 (MQ=255) aTGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCaaa < 2:301256/148‑1 (MQ=255) aTGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCACAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGa < 1:253211/123‑1 (MQ=255) gTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAAc > 4:129673/1‑149 (MQ=255) aaaaaaCCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTa > 4:85958/1‑148 (MQ=255) aaaaaCCGGCTTTTACAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATc > 6:92060/1‑149 (MQ=255) aaaaaCCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATc < 2:70377/149‑1 (MQ=255) aaaCCGGCTGGAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATACATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATCca > 3:170385/1‑149 (MQ=255) | ATACCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAACCGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATCCA > NC_002947/68197‑68479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |