| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,380,746 | C→A | 6.7% | intergenic (‑134/+1) | PP_t67 ← / ← PP_t66 | tRNA‑Met/tRNA‑Met |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,380,746 | 0 | C | A | 6.7% | 229.7 / 5.0 | 74 | intergenic (‑134/+1) | PP_t67/PP_t66 | tRNA‑Met/tRNA‑Met |
| Reads supporting (aligned to +/- strand): ref base C (36/33); new base A (2/3); total (38/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.98e-01 | |||||||||||
CTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGATTTGTCGATGTTTTT > NC_002947/1380598‑1380892 | ctgctCCATCGCGCGTCAGTGGGGCGGATTCTACCGTGGGTGGTTTGTATGTCACGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATc < 2:265404/149‑1 (MQ=255) gctCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTg > 7:36088/1‑149 (MQ=255) ctCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTg‑‑g < 7:88614/149‑1 (MQ=255) ctCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGAGTTAACAGTGGCCTTTTCTTGAATCTg‑‑g > 4:40430/1‑149 (MQ=255) cATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑Tg > 2:45538/1‑149 (MQ=255) gttgtgCGGATTCTACAGTGTGTTGTTTGTATTTCAAGCTCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTTTTAACAGTGGCCTTTTCTTGAATCTT‑‑GT‑TGCGGTAGCCTGAt < 1:139718/144‑1 (MQ=18) gTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGAt > 1:38978/1‑149 (MQ=255) tGGGGCTGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGAtt < 5:242526/149‑1 (MQ=255) tGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGAtt < 4:18213/149‑1 (MQ=255) ggATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAAcc < 3:40430/149‑1 (MQ=255) tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCgg > 3:258277/1‑134 (MQ=255) tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCgg < 4:258277/134‑1 (MQ=255) tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGAGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGAATTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCgacgac > 2:161185/1‑149 (MQ=255) tgtgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCgg < 2:38978/148‑1 (MQ=255) tgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCg < 6:13842/117‑1 (MQ=255) tgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCg > 5:13842/1‑117 (MQ=255) tgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGt > 8:257349/1‑148 (MQ=255) cgtGTATGTCAATATTTATGCTTTTATTTTTCGAAGTTTTTTCGCCACTGCTTATCAGCAGGCAAAGAAAAAGGACTCTCTTCTTACATTTGCGTTTTCTTGAATATG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATg < 2:4032/147‑1 (MQ=12) tCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgac > 2:22794/1‑149 (MQ=255) gcgcTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGc < 8:36088/149‑1 (MQ=255) gcTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTa > 8:284230/1‑149 (MQ=255) cTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTAc > 1:154257/1‑149 (MQ=255) cTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTAc < 5:259040/149‑1 (MQ=255) cTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgc < 1:45538/149‑1 (MQ=255) tttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcga > 2:181222/1‑135 (MQ=255) tttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcga < 1:181222/135‑1 (MQ=255) tttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgct > 4:142621/1‑149 (MQ=255) tGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgct < 2:154257/147‑1 (MQ=255) aTTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgct < 1:22794/148‑1 (MQ=255) aTTTTTCGACGTTATTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGACACTGTGTTAACAGTGGCCTATTCTTGAATCTG‑‑GT‑TGCGGGATCCCGATTAGAACctacg > 5:14256/1‑110 (MQ=255) aCGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGccc < 6:4275/121‑1 (MQ=255) aCGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGccc > 5:4275/1‑121 (MQ=255) aCGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgc > 3:172128/1‑149 (MQ=255) aCGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgc > 7:323650/1‑149 (MQ=255) gTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATg > 6:332174/1‑114 (MQ=255) gTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATg < 5:332174/114‑1 (MQ=255) gTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgcg > 7:302105/1‑148 (MQ=255) gTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGt < 7:257349/149‑1 (MQ=255) gTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGt < 7:284230/149‑1 (MQ=255) ttttCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAg > 1:21530/1‑149 (MQ=255) gcgAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTGGAGTGTGCGGGAGCCGGATTTGAACCGACGACATTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTg > 1:111589/1‑149 (MQ=17) gcgAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgggg > 8:142484/1‑149 (MQ=255) cgAATGCTTATCAGCAGGAAAAGAAAAAGGCCAGTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCTGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc < 1:161185/149‑1 (MQ=255) taatggatATCAGCATGTATATAAAAAGGCCACTGTGTTAACATTGGTCTTTTATTTAATCTT‑‑GT‑TGCGTGAGCAGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGTCGAGCTACCATGCTGCTCCATCCCGCGTCAGTgg < 4:56820/138‑1 (MQ=14) gAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAAACGACTACCTTCGGGTTATGAGCACGACGAGCTACAAGGCTGCTCCATCCCGCTTCAGTgg > 3:56820/1‑145 (MQ=17) ttATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTc > 7:85684/1‑148 (MQ=255) gcagGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGc > 8:323132/1‑148 (MQ=255) caaaccccgcctgtgtaaaagcagcgcggggtttgttctgacGAATATG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGc < 2:357830‑M2/60‑1 (MQ=255) caaaccccgcctgtgtaaaagcagcgcggggtttgttctgacGAATATG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGc > 1:357830‑M2/43‑102 (MQ=255) aaccccgcctgtgtaaaagcagcgcggggtttgttctgacGAATATG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACagtgtgtg > 3:220818‑M2/41‑148 (MQ=255) aaaGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGtt > 3:197743/1‑83 (MQ=38) aaaGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGtt < 4:197743/83‑1 (MQ=38) aaaGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGt < 8:85684/149‑1 (MQ=255) gcctgtgtaaaagcagcgcggggtttgttctgacGAATATG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTggtttgt < 4:220818‑M2/115‑3 (MQ=255) aaaaaGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTtat > 2:95618/1‑149 (MQ=255) aaaaGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTtata < 4:172128/149‑1 (MQ=255) aaaaGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTtat < 7:323132/148‑1 (MQ=255) gCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTc > 7:175891/1‑148 (MQ=255) cACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAg < 8:323650/149‑1 (MQ=255) tgtgTTAACAGTGGCCTTTTCTTTAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAgg > 6:69939/1‑90 (MQ=255) tgtgTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAgg < 5:69939/90‑1 (MQ=38) ttAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTc < 1:85749/92‑1 (MQ=33) ttAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTc > 2:85749/1‑92 (MQ=33) caCAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTatat < 1:173888/133‑1 (MQ=255) caCAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTatat > 2:173888/2‑134 (MQ=255) tGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGAt > 7:189793/1‑149 (MQ=255) tGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGAt < 8:189793/149‑1 (MQ=255) tGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGAt < 3:142621/149‑1 (MQ=255) gCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGAttt > 3:218043/1‑149 (MQ=255) ttGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCgg < 2:112181/44‑1 (MQ=35) ttGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCgg > 1:112181/1‑44 (MQ=35) gAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTTTGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGATTTGTCGATGttt > 3:307645/1‑149 (MQ=255) aaTCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAg > 8:117710/1‑128 (MQ=40) aaTCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAg < 7:117710/128‑1 (MQ=40) aTCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGATTTGTCGATGttttt < 2:111589/149‑1 (MQ=255) | CTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCCTTTTCTTGAATCTG‑‑GT‑TGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAGCGCTAGGCTTTGATTTGTCGATGTTTTT > NC_002947/1380598‑1380892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |