Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,483,877 | T→G | 7.3% | intergenic (+22/‑46) | yhdW → / → yhdX | amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,483,877 | 0 | T | G | 7.3% | 163.6 / 3.9 | 55 | intergenic (+22/‑46) | yhdW/yhdX | amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base T (26/25); new base G (2/2); total (28/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 |
TGGGTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTC > NC_002947/1483734‑1484018 | tGGGTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCccgc < 5:60118/149‑1 (MQ=255) aaCTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCccgccgccg > 8:90244/1‑149 (MQ=255) cTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCa < 3:261343/149‑1 (MQ=255) aTGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAgg > 7:146781/1‑149 (MQ=255) aTGGCGAAGGGTTCGAGAACAACCTCGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCGGGATGCCGCCGCAgg < 3:97554/149‑1 (MQ=255) gCGAAGTTTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCTT‑GAACGACCTGTGGAAAAAAGTCTGCATCCAGTACGCGCCTCCAGTGAGCTGATGGCTGCACCCTGCGGCCGCCTCCCGCCGCCGCATGCTg > 6:42539/1‑149 (MQ=255) gCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCGGGATGCCGCCGCAgg > 5:4461/1‑146 (MQ=255) cGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGt > 1:16484/1‑149 (MQ=255) gAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGt > 1:277868/1‑149 (MQ=255) gAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGtt < 7:90244/149‑1 (MQ=255) aaGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTc < 7:209550/149‑1 (MQ=255) ttCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GGACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATc > 5:103783/1‑149 (MQ=255) cGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATccc > 8:196496/1‑149 (MQ=255) gagaAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATccc > 1:353923/1‑148 (MQ=255) agaagaACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTa > 8:53614/1‑149 (MQ=255) aaCCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTc > 1:199596/1‑149 (MQ=255) ccTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GTACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCTCAGGCTGTTCGAATCCCTACTGTCCg < 1:192633/149‑1 (MQ=255) ggCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCgggg < 2:199596/148‑1 (MQ=255) cTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCACGCCGCCGCAGGCTGTTCGAATACCTACTGTCCGGGGC‑ACTTCATGc > 2:175873/1‑148 (MQ=255) ttGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCggg < 8:132306/132‑1 (MQ=255) ttGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCggg > 7:132306/1‑132 (MQ=255) gAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAaaatca < 2:16484/148‑1 (MQ=255) aaGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAaaatcaaa < 6:69127/149‑1 (MQ=255) gATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAaaatcaaatc > 6:280398/1‑149 (MQ=255) gTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCAcc < 2:353923/149‑1 (MQ=255) tgccAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTCCGGCCGCATCCCGCCGCCCCAGGCTGATCGAATCCCTACTGTCCCGGGC‑ACATCATCAAAAATAAAATACGCGCAccc > 8:137824/4‑149 (MQ=255) aaCGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAgggtt > 1:132887/1‑147 (MQ=255) cTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTccc < 7:196496/149‑1 (MQ=255) gAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGTTTGTCCCTTaa < 2:132887/148‑1 (MQ=255) accaccggcgcCCTCCCGTCCCCGCCTCCCGTGCGCTGATGGCGGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTGCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTaa < 4:294867/142‑1 (MQ=255) aacaacGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTaa > 3:294867/1‑147 (MQ=255) aacaacGGCGGCATCCAGTACGCGACTCCAGTGCGCTGATGTCTGCACCCTGCGGCGGCATCCCGCCGCGGCCGGCTGGTCGACTCCCTACTGTCCCGGGC‑ACTTCATGCAAAATCAAATCGGATAACACAATGGCTTGTCCCTTAAc > 6:274261/1‑148 (MQ=255) cggcATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCgt < 2:277868/149‑1 (MQ=255) gcATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCgtgt < 6:103783/149‑1 (MQ=255) gcATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCgtgt < 7:137824/149‑1 (MQ=255) aTCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTgc > 5:310269/1‑149 (MQ=255) cAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCAt > 8:189100/1‑93 (MQ=255) cAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCAt < 7:189100/93‑1 (MQ=255) tACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGt > 5:367356/1‑149 (MQ=255) aCGCGGCTGCAGTGCGCTGATGGCTGCACCCTGCGGCTGCATCCCGCAGCCGCAGGGTGTTCTAATCCCTACTGTCCGGTGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGt < 5:42539/148‑1 (MQ=255) cgcgCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTg < 6:367356/148‑1 (MQ=255) gcgcCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGc < 8:146781/149‑1 (MQ=255) cTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCgt > 5:262728/1‑132 (MQ=255) cTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCgt < 6:262728/132‑1 (MQ=255) cAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTc > 4:131553/1‑147 (MQ=255) cAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTc > 1:337483/1‑147 (MQ=255) cAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGACGCAGGCTGTTAGAATCCCTACTGACCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCATGTCCCTTAACGATCCGAGTGTGCGCGAGTGGCTGATc > 4:320366/1‑147 (MQ=255) actGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCATGTGCGCGCGTGGCTGTTCCAg < 7:53614/147‑1 (MQ=255) gTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTg < 3:60096/138‑1 (MQ=255) gTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTg > 4:60096/1‑138 (MQ=255) cgcTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATc < 2:337483/148‑1 (MQ=255) gCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATc < 6:310269/149‑1 (MQ=255) aacagccTGCGGCGGCGGGATGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTcc < 5:299850/128‑1 (MQ=39) aacagccTGCGGCGGCGGGATGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTcc > 6:299850/6‑133 (MQ=39) gcggcATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCAACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTTGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTc > 1:263242/1‑149 (MQ=255) tCCCGCCGCCGCAGGCTTTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTACCTGAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATTGt > 2:123210/1‑132 (MQ=255) | TGGGTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCAT‑GAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGC‑ACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTC > NC_002947/1483734‑1484018 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |