Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,556,982 | T→G | 8.8% | intergenic (+34/‑59) | purU‑II → / → PP_5468 | formyltetrahydrofolate hydrolase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,556,982 | 0 | T | G | 8.8% | 167.1 / 7.0 | 57 | intergenic (+34/‑59) | purU‑II/PP_5468 | formyltetrahydrofolate hydrolase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (26/26); new base G (3/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 |
ATGGTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAA > NC_002947/1556838‑1557121 | aTGGTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTgcg > 3:113813/1‑148 (MQ=255) gTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGc > 1:83629/1‑149 (MQ=255) cGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGATGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTTCCGGCTTGCTGTGAGATTCCGGGCTGCGCAGCAGccc < 1:65206/149‑1 (MQ=255) cTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGt < 4:140811/149‑1 (MQ=255) cTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGt > 4:335211/1‑149 (MQ=255) cGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCAc > 4:161751/1‑149 (MQ=255) gCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTTGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGTTGTTCGACTGACACGG‑TCCGGCTTGCTGTGAGATTCCGGGCtgctgc < 3:163503/134‑1 (MQ=255) gCCGTGATGTGGAGAAGATGGAGCTGGACCGTGGACTGCGTTATCACATGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTCCTGTGAGATTCCGGGCtgatgc > 4:163503/1‑134 (MQ=255) ccGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGa > 5:248795/1‑148 (MQ=255) ccGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGAc < 1:207028/149‑1 (MQ=255) aTGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAggg < 8:218781/148‑1 (MQ=255) tgGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TGCGGCTTGCTGTGAGATTGCGGGCTGCTGCGCAGCCCTGTCACGACAGGGgcgc < 1:316947/149‑1 (MQ=255) gagaAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGGGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGgcg > 7:334278/1‑146 (MQ=255) gagaAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCGCAGCAGcccgg > 4:219376/1‑130 (MQ=255) gagaAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCGCAGCAGcccgg < 3:219376/132‑3 (MQ=255) aagaTGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAgc > 4:124318/1‑149 (MQ=255) aagaTGGTGCTGGCCCGTGGCCTGCGTTATCACCTCGAGGACCGCGTGCTGGTGCATGGTAACAACACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAgc > 1:357695/1‑149 (MQ=255) gTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGcccc < 3:335211/148‑1 (MQ=255) tGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGccccag < 3:161751/149‑3 (MQ=255) cTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCTCTGCGcccctgtc < 6:248795/149‑5 (MQ=255) tGGCCCGTGGCCTGCGTTATCAGCTGGAGGACCGCGTGCTGGTGCAGGGTAGCAAGCCTGTGGTGTGCGACTGACACCG‑GCCCGCTGGCTGTGAGCTTCCGGGCTGCTGCGCAGCCCGGTGGCGACAGGGGCGCGGAGCGCCCCGGcca > 6:352163/1‑147 (MQ=255) ccGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCt > 2:190247/1‑149 (MQ=255) gCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGt < 1:92388/148‑1 (MQ=255) gCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAAc > 8:85511/1‑149 (MQ=255) ggTTTTCACCTGGAGGACCGCGTGCTGGTGCATGGAAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCGGTGAGTTCCCGGGCTCCTGCGCAGCCCTGTCTCGACAGGGGCGCAGACCGCCCCGGCAATCCTGGGTGAAACg < 2:357695/148‑1 (MQ=255) tCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCaa < 4:138120/130‑1 (MQ=255) tCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCaa > 3:138120/1‑130 (MQ=255) gaggaCCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCaa < 2:83629/148‑1 (MQ=255) ggaCCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGGGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAgca < 8:334278/149‑1 (MQ=255) gcgTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCgg > 3:262465/1‑113 (MQ=255) gcgTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCgg < 4:262465/113‑1 (MQ=255) gTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAAcccc < 3:124318/149‑1 (MQ=255) aaCAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCa > 4:117534/1‑149 (MQ=255) gACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTc > 1:3304/1‑148 (MQ=255) gtgtTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc < 5:136097/149‑1 (MQ=255) gtgtTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc > 1:307462/1‑149 (MQ=255) ttCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCtt > 3:220791/1‑149 (MQ=255) tCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg > 3:34799/1‑149 (MQ=255) cGACTGACACCG‑TCCGGCTTGCTGTGAGGTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCt < 6:250704/130‑1 (MQ=255) cGACTGACACCG‑TCCGGCTTGCTGTGAGGTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCt > 5:250704/1‑130 (MQ=255) tGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTggg < 4:151379/85‑1 (MQ=255) tGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTggg > 3:151379/1‑85 (MQ=255) tGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGCAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCg > 7:277815/1‑147 (MQ=255) cacCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCg < 7:277611/117‑1 (MQ=255) cacCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCg > 8:277611/1‑117 (MQ=255) gCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg < 3:45744/132‑1 (MQ=255) gCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGCGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg > 4:45744/1‑132 (MQ=255) tgtgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGc > 1:67180/1‑137 (MQ=255) tgtgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTAc > 3:69111/1‑149 (MQ=255) tgtgAGATTCCGGGCGGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGc < 2:67180/137‑1 (MQ=255) tgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGa < 4:220791/149‑1 (MQ=255) agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAcc < 7:85511/149‑1 (MQ=255) agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAcc < 2:307462/149‑1 (MQ=255) agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAcc > 2:228551/1‑149 (MQ=255) agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAc < 1:190247/148‑1 (MQ=255) ttCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGCTGAAACGGCAATGACCAAGCAACGCAACAACCACGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTg < 4:113813/149‑1 (MQ=255) gacagggCTGCGCAGCAGCCCGGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCt > 8:133082/5‑148 (MQ=255) acagggCTGCGCAGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAACCAACGCAACACCCCCGTCGCCTCACCTCCCCCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTg > 2:221058/4‑148 (MQ=255) cGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGCGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGaa < 5:352163/148‑1 (MQ=255) | ATGGTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCG‑TCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAA > NC_002947/1556838‑1557121 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |