Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,556,982 T→G 8.8% intergenic (+34/‑59) purU‑II → / → PP_5468 formyltetrahydrofolate hydrolase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,556,9820TG 8.8% 167.1 / 7.0 57intergenic (+34/‑59)purU‑II/PP_5468formyltetrahydrofolate hydrolase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (26/26);  new base G (3/2);  total (29/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01

ATGGTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAA  >  NC_002947/1556838‑1557121
                                                                                                                                                 |                                                                                                                                           
aTGGTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTgcg                                                                                                                                          >  3:113813/1‑148 (MQ=255)
   gTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGc                                                                                                                                      >  1:83629/1‑149 (MQ=255)
      cGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGATGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTTCCGGCTTGCTGTGAGATTCCGGGCTGCGCAGCAGccc                                                                                                                                    <  1:65206/149‑1 (MQ=255)
        cTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGt                                                                                                                                 <  4:140811/149‑1 (MQ=255)
        cTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGt                                                                                                                                 >  4:335211/1‑149 (MQ=255)
           cGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCAc                                                                                                                              >  4:161751/1‑149 (MQ=255)
             gCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTTGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGTTGTTCGACTGACACGGTCCGGCTTGCTGTGAGATTCCGGGCtgctgc                                                                                                                                           <  3:163503/134‑1 (MQ=255)
             gCCGTGATGTGGAGAAGATGGAGCTGGACCGTGGACTGCGTTATCACATGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTCCTGTGAGATTCCGGGCtgatgc                                                                                                                                           >  4:163503/1‑134 (MQ=255)
              ccGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGa                                                                                                                            >  5:248795/1‑148 (MQ=255)
              ccGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGAc                                                                                                                           <  1:207028/149‑1 (MQ=255)
                   aTGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAggg                                                                                                                       <  8:218781/148‑1 (MQ=255)
                      tgGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTGCGGCTTGCTGTGAGATTGCGGGCTGCTGCGCAGCCCTGTCACGACAGGGgcgc                                                                                                                   <  1:316947/149‑1 (MQ=255)
                        gagaAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGGGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGgcg                                                                                                                    >  7:334278/1‑146 (MQ=255)
                        gagaAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCGCAGCAGcccgg                                                                                                                                  >  4:219376/1‑130 (MQ=255)
                        gagaAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCGCAGCAGcccgg                                                                                                                                  <  3:219376/132‑3 (MQ=255)
                           aagaTGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAgc                                                                                                              >  4:124318/1‑149 (MQ=255)
                           aagaTGGTGCTGGCCCGTGGCCTGCGTTATCACCTCGAGGACCGCGTGCTGGTGCATGGTAACAACACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAgc                                                                                                              >  1:357695/1‑149 (MQ=255)
                                 gTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGcccc                                                                                                         <  3:335211/148‑1 (MQ=255)
                                  tGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGccccag                                                                                                       <  3:161751/149‑3 (MQ=255)
                                    cTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCTCTGCGcccctgtc                                                                                                     <  6:248795/149‑5 (MQ=255)
                                     tGGCCCGTGGCCTGCGTTATCAGCTGGAGGACCGCGTGCTGGTGCAGGGTAGCAAGCCTGTGGTGTGCGACTGACACCGGCCCGCTGGCTGTGAGCTTCCGGGCTGCTGCGCAGCCCGGTGGCGACAGGGGCGCGGAGCGCCCCGGcca                                                                                                    >  6:352163/1‑147 (MQ=255)
                                         ccGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCt                                                                                                >  2:190247/1‑149 (MQ=255)
                                              gCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGt                                                                                            <  1:92388/148‑1 (MQ=255)
                                                  gCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAAc                                                                                       >  8:85511/1‑149 (MQ=255)
                                                   ggTTTTCACCTGGAGGACCGCGTGCTGGTGCATGGAAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCGGTGAGTTCCCGGGCTCCTGCGCAGCCCTGTCTCGACAGGGGCGCAGACCGCCCCGGCAATCCTGGGTGAAACg                                                                                      <  2:357695/148‑1 (MQ=255)
                                                        tCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCaa                                                                                                    <  4:138120/130‑1 (MQ=255)
                                                        tCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCaa                                                                                                    >  3:138120/1‑130 (MQ=255)
                                                               gaggaCCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCaa                                                                           <  2:83629/148‑1 (MQ=255)
                                                                 ggaCCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGGGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAgca                                                                        <  8:334278/149‑1 (MQ=255)
                                                                      gcgTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCgg                                                                                                       >  3:262465/1‑113 (MQ=255)
                                                                      gcgTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCgg                                                                                                       <  4:262465/113‑1 (MQ=255)
                                                                              gTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAAcccc                                                           <  3:124318/149‑1 (MQ=255)
                                                                                       aaCAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCa                                                  >  4:117534/1‑149 (MQ=255)
                                                                                            gACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTc                                              >  1:3304/1‑148 (MQ=255)
                                                                                                   gtgtTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc                                      <  5:136097/149‑1 (MQ=255)
                                                                                                   gtgtTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc                                      >  1:307462/1‑149 (MQ=255)
                                                                                                      ttCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCtt                                   >  3:220791/1‑149 (MQ=255)
                                                                                                       tCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg                                  >  3:34799/1‑149 (MQ=255)
                                                                                                        cGACTGACACCGTCCGGCTTGCTGTGAGGTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCt                                                    <  6:250704/130‑1 (MQ=255)
                                                                                                        cGACTGACACCGTCCGGCTTGCTGTGAGGTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCt                                                    >  5:250704/1‑130 (MQ=255)
                                                                                                            tGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTggg                                                                                             <  4:151379/85‑1 (MQ=255)
                                                                                                            tGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTggg                                                                                             >  3:151379/1‑85 (MQ=255)
                                                                                                            tGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGCAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCg                               >  7:277815/1‑147 (MQ=255)
                                                                                                               cacCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCg                                                          <  7:277611/117‑1 (MQ=255)
                                                                                                               cacCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCg                                                          >  8:277611/1‑117 (MQ=255)
                                                                                                                         gCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg                                  <  3:45744/132‑1 (MQ=255)
                                                                                                                         gCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGCGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg                                  >  4:45744/1‑132 (MQ=255)
                                                                                                                               tgtgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGc                       >  1:67180/1‑137 (MQ=255)
                                                                                                                               tgtgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTAc           >  3:69111/1‑149 (MQ=255)
                                                                                                                               tgtgAGATTCCGGGCGGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGc                       <  2:67180/137‑1 (MQ=255)
                                                                                                                                 tgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGa         <  4:220791/149‑1 (MQ=255)
                                                                                                                                   agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAcc       <  7:85511/149‑1 (MQ=255)
                                                                                                                                   agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAcc       <  2:307462/149‑1 (MQ=255)
                                                                                                                                   agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAcc       >  2:228551/1‑149 (MQ=255)
                                                                                                                                   agaTTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGAc        <  1:190247/148‑1 (MQ=255)
                                                                                                                                      ttCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGCTGAAACGGCAATGACCAAGCAACGCAACAACCACGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTg    <  4:113813/149‑1 (MQ=255)
                                                                                                                                      gacagggCTGCGCAGCAGCCCGGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCt     >  8:133082/5‑148 (MQ=255)
                                                                                                                                       acagggCTGCGCAGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAACCAACGCAACACCCCCGTCGCCTCACCTCCCCCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTg    >  2:221058/4‑148 (MQ=255)
                                                                                                                                         cGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGCGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGaa  <  5:352163/148‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                           
ATGGTCCGCTTCGGCCGTGATGTGGAGAAGATGGTGCTGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAA  >  NC_002947/1556838‑1557121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: