| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,582,780 | T→A | 8.9% | intergenic (‑226/‑32) | ttgA ← / → ttgR | efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,582,780 | 0 | T | A | 8.9% | 218.2 / 9.5 | 79 | intergenic (‑226/‑32) | ttgA/ttgR | efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR |
| Reads supporting (aligned to +/- strand): ref base T (36/35); new base A (5/2); total (41/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.83e-01 | |||||||||||
TGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGA > NC_002947/1582634‑1582918 | tGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTgc < 6:246135/149‑1 (MQ=255)tGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCAGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTgc > 2:256081/1‑149 (MQ=255) ggATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTgcg > 8:185493/1‑149 (MQ=255) gATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTgcgc < 3:217695/149‑1 (MQ=255) aaaTAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGtt > 3:108000/1‑149 (MQ=255) tGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGc > 2:348897/1‑146 (MQ=255) aGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGa < 4:350900/148‑1 (MQ=255) ataCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCggg > 5:22648/1‑134 (MQ=255) ataCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCggg > 5:27925/1‑134 (MQ=255) ataCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCggg < 6:22648/134‑1 (MQ=255) ataCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCggg < 6:27925/134‑1 (MQ=255) aCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACt > 1:238473/1‑149 (MQ=255) aCATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCa > 6:258830/1‑149 (MQ=255) tCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCAATGGt > 1:215145/1‑149 (MQ=255) aTGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTc < 7:185493/148‑1 (MQ=255) gttgttTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGt < 7:60/148‑1 (MQ=255) tttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAAc < 2:238473/149‑1 (MQ=255) tttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAAc < 5:258830/149‑1 (MQ=255) tttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAAc > 8:185654/1‑149 (MQ=255) tgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAAcc > 6:89519/1‑148 (MQ=255) tAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCaaa < 4:108000/149‑1 (MQ=255) tAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCa > 6:169530/1‑147 (MQ=255) aaaTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCa > 1:312814/1‑146 (MQ=255) aTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTg < 8:179746/98‑1 (MQ=255) aTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTg > 7:179746/1‑98 (MQ=255) gctgGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGc > 2:123351/1‑149 (MQ=255) ggtggtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCa < 1:348897/148‑1 (MQ=255) tggtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGt > 6:259593/1‑122 (MQ=255) tggtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGt < 5:259593/122‑1 (MQ=255) gtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGaaa < 6:327317/149‑1 (MQ=255) tACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACt > 5:146816/1‑111 (MQ=255) tACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACt < 6:146816/111‑1 (MQ=255) tCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCg > 1:138212/1‑149 (MQ=255) ccTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAaagaa < 7:46060/122‑1 (MQ=255) ccTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAaagaa > 8:46060/1‑122 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAaagaagaa < 6:159893/123‑1 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAaagaagaa > 5:159893/1‑123 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGcc > 1:242389/1‑141 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGcc < 2:242389/141‑1 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGGCGACCCAAAGAAGCAGCCCAGGAACCCCGTGCCCAGatcat > 6:204199/1‑149 (MQ=255) gcgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGa < 7:185654/149‑1 (MQ=255) cgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAg > 2:317295/1‑149 (MQ=255) cgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAg < 1:233138/149‑1 (MQ=255) cgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAg > 7:121464/1‑149 (MQ=255) cgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAg > 2:233138/1‑149 (MQ=255) cTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGccc > 8:227938/1‑136 (MQ=255) cTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGccc < 7:227938/136‑1 (MQ=255) cTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAggc > 5:338316/1‑149 (MQ=255) ttGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAggcg < 1:317295/149‑1 (MQ=255) ttGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAggcg > 4:350933/1‑149 (MQ=255) gCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCgg > 5:255389/1‑64 (MQ=255) gCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCgg < 6:255389/64‑1 (MQ=255) ttATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg > 1:254541/1‑149 (MQ=255) aTCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg < 2:254541/147‑1 (MQ=255) ccGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAg > 5:274148/1‑109 (MQ=255) ccGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGGTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAg < 6:274148/109‑1 (MQ=255) cGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCtt < 5:169530/149‑1 (MQ=255) gagaGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat < 8:22094/127‑1 (MQ=255) gagaGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat > 7:22094/1‑127 (MQ=255) gagGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTa > 3:147177/1‑149 (MQ=255) agGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTAc < 3:350933/149‑1 (MQ=255) gCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCGGCGCGGTCGGGCCAGCTGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACaa < 6:198761/149‑1 (MQ=255) gCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCgg < 2:215145/149‑1 (MQ=255) gTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGACCCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTgc < 5:204199/149‑1 (MQ=255) gTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGcgcg < 8:114564/142‑1 (MQ=255) gTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGcgcg > 7:114564/1‑142 (MQ=255) tGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTgcg < 1:256081/149‑1 (MQ=255) cccccGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGcgcg > 5:49593/1‑139 (MQ=255) cccccGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGcgcg < 6:49593/139‑1 (MQ=255) cccGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGaa > 7:168755/1‑149 (MQ=255) ggAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCggg > 5:132201/1‑136 (MQ=255) ggAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCggg < 6:132201/136‑1 (MQ=255) ttCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTgg < 5:89519/149‑1 (MQ=255) cccGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGcc < 8:168755/148‑1 (MQ=255) ccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTGTTAATGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAACCCCGTGCCCAGATCATCGAGGCGGCGGAAAGGCCCTtata > 1:234410/1‑117 (MQ=255) ccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGa > 7:183030/1‑149 (MQ=255) ccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGa > 7:177842/1‑149 (MQ=255) gcTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAg < 7:334736/99‑1 (MQ=255) gcTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAg > 8:334736/1‑99 (MQ=255) | TGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTG‑TACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGA > NC_002947/1582634‑1582918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |