Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,683,248 | C→G | 8.1% | intergenic (+57/‑174) | recJ → / → PP_1478 | ssDNA‑specific exonuclease RecJ/xenobiotic reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,683,248 | 0 | C | G | 8.1% | 149.0 / 3.0 | 49 | intergenic (+57/‑174) | recJ/PP_1478 | ssDNA‑specific exonuclease RecJ/xenobiotic reductase |
Reads supporting (aligned to +/- strand): ref base C (24/21); new base G (2/2); total (26/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGGGTGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAT > NC_002947/1683102‑1683392 | tGGGTGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGccgcccg > 1:276022/1‑149 (MQ=255) cGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAt > 3:79340/1‑149 (MQ=255) gTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAtc > 1:336817/1‑149 (MQ=255) aCAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCGCGGGCGGCGCt < 8:17033/142‑1 (MQ=255) aCAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCGCGGGCGGCGCt > 7:17033/1‑142 (MQ=255) cTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAgg > 1:116932/1‑149 (MQ=255) gATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGgcgc < 7:261518/149‑1 (MQ=255) gATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGgcg < 2:264063/148‑1 (MQ=255) aaCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAtct < 3:117741/134‑1 (MQ=255) aaCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAtct > 4:117741/1‑134 (MQ=255) aCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAtctc > 5:279164/1‑134 (MQ=255) aCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGAtctc < 6:279164/134‑1 (MQ=255) cGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAAcc > 3:113899/1‑149 (MQ=255) gAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCt < 4:79340/149‑1 (MQ=255) cgGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCg > 3:241081/1‑148 (MQ=255) ggTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGaa > 3:210140/1‑149 (MQ=255) tGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAAc < 7:307444/145‑1 (MQ=255) tGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAAc > 8:307444/1‑145 (MQ=255) agatTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTc < 1:45034/148‑1 (MQ=255) gtgtGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCa > 3:101282/1‑149 (MQ=255) tgCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATcc < 2:336817/149‑1 (MQ=255) cAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCCCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCca > 2:268872/1‑149 (MQ=255) gatgatTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCaaa < 1:350706/117‑1 (MQ=255) gcgcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTccc < 2:276022/148‑1 (MQ=255) gcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTccccc > 7:188555/1‑148 (MQ=255) atatGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCccac > 1:226313/1‑149 (MQ=255) gAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATc > 6:11702/1‑149 (MQ=255) gcgcTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTc < 8:188555/149‑1 (MQ=255) cTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCCCACAGGCGCTGCAAACCTTTCCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTa < 1:268872/149‑1 (MQ=255) aGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCGGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTATtc < 4:241081/148‑1 (MQ=255) tttAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGtc > 2:255765/1‑146 (MQ=255) tttAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGtc < 1:255765/146‑1 (MQ=255) cGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCcca > 3:296672/1‑125 (MQ=255) cGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCcca < 4:296672/125‑1 (MQ=255) ctgcctTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCAcc > 6:319710/1‑149 (MQ=255) tgcctTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCg > 5:225894/1‑149 (MQ=255) ttGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTa < 8:200936/132‑1 (MQ=255) ttGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTa > 7:200936/1‑132 (MQ=255) gATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAg < 4:113899/148‑1 (MQ=255) gcgcTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGAt < 5:11702/146‑1 (MQ=255) ggCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa < 4:210140/149‑1 (MQ=255) gCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGGCTAGTCTCATTAATGCCCGGCACCGGGCCAGGGATGTGCACGTGAg > 4:293501/1‑149 (MQ=255) cacaAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAgt > 8:292006/1‑149 (MQ=255) caAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa < 4:305023/145‑1 (MQ=255) caAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGa > 3:305023/1‑145 (MQ=255) aaTCGAGCGCCGCCCGCGCGGCGCTCGATCTAACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTcc > 1:218128/1‑149 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATc < 4:254640/92‑1 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCAACCCACAGAACCTCCCCCCACCAATc > 3:254640/1‑92 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCgg < 3:293501/149‑1 (MQ=255) gcgcCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCg > 4:101419/1‑149 (MQ=255) ccgcccgcGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGCACCCCTCGCCATCCCACAGACCCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAt > 7:140202/1‑149 (MQ=255) ccgcccgcGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGc > 4:60356/1‑117 (MQ=255) ccgcccgcGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGc < 3:60356/117‑1 (MQ=255) | TGGGTGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTT‑CGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGAT > NC_002947/1683102‑1683392 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |