| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 103,818 | A→T | 9.3% | intergenic (+116/‑24) | PP_0098 → / → PP_0099 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 103,818 | 0 | A | T | 9.3% | 133.9 / 5.2 | 54 | intergenic (+116/‑24) | PP_0098/PP_0099 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (26/23); new base T (3/2); total (29/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.28e-01 | |||||||||||
TTGTTTGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAC > NC_002947/103676‑103966 | ttgttTGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATa < 2:349171/149‑1 (MQ=255) tGGTGCAGTGCTGCAGCCCAAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGAATATTAATACAGTa > 2:215690/1‑149 (MQ=255) ggTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTa < 7:236236/148‑1 (MQ=255) gCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTaa > 4:247635/1‑138 (MQ=255) gCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTaa < 3:247635/138‑1 (MQ=255) cAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcgtg < 8:121639/149‑5 (MQ=255) gTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGt < 6:150951/149‑1 (MQ=255) cTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGAtt > 2:168180/1‑149 (MQ=255) gcTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATtcctc > 2:99895/1‑147 (MQ=255) ggATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAg < 8:337289/149‑1 (MQ=255) ggATGGGCGGCAATCGAGCCAGGCAGCGTATGAGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAg > 1:44235/1‑149 (MQ=255) aTGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAggg < 7:103974/149‑1 (MQ=255) gggCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGcc > 7:154709/1‑149 (MQ=255) ccAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGgc < 7:260346/145‑1 (MQ=255) ccAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGgc > 8:260346/1‑145 (MQ=255) gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc < 5:15318/149‑1 (MQ=255) gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc > 2:178621/1‑149 (MQ=255) gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc < 2:75168/149‑1 (MQ=255) aGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCca < 8:154709/149‑1 (MQ=255) gCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCca > 3:30348/1‑148 (MQ=255) tgCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCg > 3:129595/1‑149 (MQ=255) gcgcTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGc > 3:232178/1‑149 (MQ=255) cgcTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGc < 4:232178/148‑1 (MQ=255) cTGGCAGGGCCTGAAGTCGTCACACCCGTGTTTCTGTTAACATCCCGGTGTGAACTATACTGTATATAATTACAGTATTCAGGTCACCCTTTATGCCTCCTGTCCCGCAAACGGGCCGTGGCAGGGCGCACAATCCACACAACCGCttt < 4:90262/149‑1 (MQ=255) gCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGcc > 6:310373/1‑149 (MQ=255) aTGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGcca > 3:257701/1‑147 (MQ=255) aTGGACTGAAGTAGTCAGACCAGAGGTGCTTGTAAGATCCCTGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGcccc < 1:215690/149‑1 (MQ=255) ccTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGTGCCGTGGCACGGCGTACAATCca > 8:322353/1‑128 (MQ=255) ccTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGTACAATCca < 7:322353/128‑1 (MQ=255) cTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc > 2:321217/1‑125 (MQ=255) cTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc < 1:321217/125‑1 (MQ=255) tGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCa > 4:230555/1‑149 (MQ=255) gtagtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCg > 5:215003/1‑149 (MQ=255) gtagtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCg < 6:215003/149‑1 (MQ=255) agtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCgg < 1:168180/148‑1 (MQ=255) gtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTg > 4:33955/1‑149 (MQ=255) agagGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCgg > 8:67905/1‑145 (MQ=255) ggTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCt < 4:228767/148‑1 (MQ=255) ggTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTg > 2:159183/1‑149 (MQ=255) gTAAGATCCCGGTGTGCACGATACTGTATATTTATACAGTATTCAGGTGAGCCATGATTCCTACAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCAACACAACCGCTTTGCCCCTGGTCATTCGGTGGAGGATGATGATGGCTgg > 1:24964/1‑149 (MQ=255) tAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCcacac > 1:306226/1‑103 (MQ=255) tAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCcacac < 2:306226/103‑1 (MQ=255) tCCCTGTGAGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCAGAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTTGTACCAg < 2:24964/149‑1 (MQ=255) tCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTTAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCa < 3:230555/148‑1 (MQ=255) cGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGc < 6:223158/137‑1 (MQ=255) cGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGc > 5:223158/1‑137 (MQ=255) cGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGaa < 1:99895/149‑1 (MQ=255) tgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGc < 2:44235/148‑1 (MQ=255) cctgaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGcc > 7:44650/6‑148 (MQ=255) cACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg > 2:270696/1‑148 (MQ=255) cACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg > 7:315689/1‑148 (MQ=255) tgaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGc > 1:331814/4‑148 (MQ=255) gaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCa > 2:234583/3‑148 (MQ=255) cGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCa > 8:57201/1‑148 (MQ=255) tataTTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAg < 8:315689/147‑1 (MQ=255) tatTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTg < 6:249932/120‑1 (MQ=255) tatTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTg > 5:249932/1‑120 (MQ=255) atTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAc > 6:77913/1‑149 (MQ=255) atTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCAAGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAc > 1:344473/1‑149 (MQ=255) | TTGTTTGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAC > NC_002947/103676‑103966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |