Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,853,215 T→C 7.4% intergenic (+60/‑64) relA → / → mazG ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,853,2150TC 7.4% 150.1 / 2.8 54intergenic (+60/‑64)relA/mazGATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase
Reads supporting (aligned to +/- strand):  ref base T (23/27);  new base C (2/2);  total (25/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01

CCAGGCCTGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTAAAGCAG  >  NC_002947/1853069‑1853362
                                                                                                                                                   |                                                                                                                                                       
ccAGGCCTGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAAt                                                                                                                                                         <  1:80108/148‑1 (MQ=255)
ccAGGCCTGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCt                                                                                                                                                       >  7:301621/1‑149 (MQ=255)
    gCCTGGACGCGCTGGGGCGCCTGCAGGGGCGGATCTCGCAGTTGCCGAACATCATCCAGACGCGGCGTAATCGTACACCTTGAGCCCGGGGCGTATGCTTAGCGGGTAAACCCGCTGCTACAGGATGGAAGCAAGTTTGAAATCTGCAc                                                                                                                                                   >  4:18242/1‑149 (MQ=255)
        ggACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTa                                                                                                                                               >  1:143222/1‑149 (MQ=255)
             cgcTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCtgt                                                                                                                                          <  6:89701/149‑1 (MQ=255)
               cTGGGGCGCCTGCTGGGGCGGATCTCGGAGTTGCGGAACATCATCGAGACGCGGCGTAATCGTAGCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAAGCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTgg                                                                                                                                        <  7:4104/149‑1 (MQ=255)
                  gggCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAg                                                                                                                                     >  5:179223/1‑149 (MQ=255)
                   ggCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGc                                                                                                                                    <  5:264345/149‑1 (MQ=255)
                      gcCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCggg                                                                                                                                 <  6:337965/149‑1 (MQ=255)
                              gggCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCAcc                                                                                                                                                  >  5:24226/1‑124 (MQ=255)
                              gggCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCAcc                                                                                                                                                  <  6:24226/124‑1 (MQ=255)
                                  ggATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCcgcg                                                                                                                       >  6:104314/1‑147 (MQ=255)
                                  ggATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTACTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCcgcg                                                                                                                       >  8:202862/1‑147 (MQ=255)
                                       tcGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGc                                                                                                                                                     <  1:329032/112‑1 (MQ=255)
                                         gCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGcca                                                                                                              >  4:110157/1‑149 (MQ=255)
                                         gCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTCTGGGAGCGGGCAAGCCCGCGAAGAAGcc                                                                                                               <  1:200636/148‑1 (MQ=255)
                                                 cGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGTAAGCCCGCGAAGAAGCCACCACCg                                                                                                       >  2:257564/1‑147 (MQ=255)
                                                                 gcggcgTAATCGTAACCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGa                                                                                   <  5:104314/149‑1 (MQ=255)
                                                                     cgTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGTAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTa                                                                               <  1:257564/149‑1 (MQ=255)
                                                                     cgTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTa                                                                               <  6:179223/149‑1 (MQ=255)
                                                                         aTCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACAcc                                                                           <  4:304184/149‑1 (MQ=255)
                                                                               ccccTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCTCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTgac                                                                     <  1:262985/149‑1 (MQ=255)
                                                                                  cTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTgacgac                                                                 >  3:152518/1‑149 (MQ=255)
                                                                                     gagaCCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGAcc                                                                <  8:301621/147‑1 (MQ=255)
                                                                                      agaCCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACctgc                                                             >  2:290557/1‑149 (MQ=255)
                                                                                        aCCGGGGCGTCTGCTTAGCGGGTTAACCCGCACCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACctgctg                                                           >  2:351394/1‑149 (MQ=255)
                                                                                          cGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGGATGACCTACACCCTTGACGACCTGCTGCa                                                         >  4:144585/1‑149 (MQ=255)
                                                                                            gggCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgc                                                                                            >  3:312051/1‑114 (MQ=255)
                                                                                            gggCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgc                                                                                            <  4:312051/114‑1 (MQ=255)
                                                                                                    gCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGcc                                               >  1:124441/1‑149 (MQ=255)
                                                                                                      cTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGccc                                              <  3:110157/149‑1 (MQ=255)
                                                                                                            gggTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTgc                                        <  7:202862/149‑1 (MQ=255)
                                                                                                                 aaCCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGAc                                   >  2:268616/1‑149 (MQ=255)
                                                                                                                  aCCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGAcc                                  >  1:175994/1‑149 (MQ=255)
                                                                                                                    ccGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACctgc                                                             <  6:363537/120‑1 (MQ=255)
                                                                                                                    ccGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACctgc                                                             >  5:363537/1‑120 (MQ=255)
                                                                                                                     cGCTCCCACAGGTACGGTGCAGATTTCAAACCTGCATCCATCCTGTAGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCg                                <  6:7749/148‑1 (MQ=21)
                                                                                                                     cGCTCCCACAGGTACGGTGCAGATTTCAAACCTGCATCCATCCTGTAGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCg                                >  5:7749/1‑148 (MQ=21)
                                                                                                                             cAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACgg                        <  1:198402/148‑1 (MQ=255)
                                                                                                                             cAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACgg                        <  2:124441/148‑1 (MQ=255)
                                                                                                                             cAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACg                         <  1:140188/147‑1 (MQ=255)
                                                                                                                                 atggatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTgcgc                                      <  2:322032/130‑1 (MQ=255)
                                                                                                                                 atggatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTgcgc                                      >  1:322032/1‑130 (MQ=255)
                                                                                                                                    ggtgCAGATTTCAAACCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGAc                                   <  1:269937/128‑1 (MQ=255)
                                                                                                                                    ggtgCAGATTTCAAACCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGAc                                   >  2:269937/3‑130 (MQ=255)
                                                                                                                                     atgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGATCCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGt                <  1:268616/149‑1 (MQ=255)
                                                                                                                                     atgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTg               >  1:48873/1‑149 (MQ=255)
                                                                                                                                       gCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTgg              >  1:1020/1‑148 (MQ=255)
                                                                                                                                        cAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGa            <  1:351394/149‑1 (MQ=255)
                                                                                                                                        acggTTTTAAATATGCACCGTACCTGTGGTTGGGGGCAAGCCCGCGAATAATCCACCATCCCAATCCCCGGGCCACCTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGt                <  1:290557/146‑1 (MQ=255)
                                                                                                                                         aGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACgg                        <  5:94663/136‑1 (MQ=255)
                                                                                                                                         aGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACgg                        >  6:94663/1‑136 (MQ=255)
                                                                                                                                          ggTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGAcc          <  2:175994/149‑1 (MQ=255)
                                                                                                                                            tttGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCt         >  2:183815/1‑148 (MQ=255)
                                                                                                                                                 aaTCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTAAAGCa   <  2:186507/149‑1 (MQ=255)
                                                                                                                                                   tCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTAAAGCAg  >  4:82853/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                       
CCAGGCCTGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTAAAGCAG  >  NC_002947/1853069‑1853362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: