Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,973,871 | A→T | 8.2% | intergenic (+28/‑120) | gyrA → / → serC | DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,973,871 | 0 | A | T | 8.2% | 164.0 / 5.5 | 61 | intergenic (+28/‑120) | gyrA/serC | DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
Reads supporting (aligned to +/- strand): ref base A (26/28); new base T (2/3); total (30/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.21e-01 |
AGCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCG > NC_002947/1973725‑1974018 | aGCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAg < 2:316276/149‑1 (MQ=255) cGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCTTGGTCGcc < 2:164076/148‑1 (MQ=255) gAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTc < 8:195195/144‑1 (MQ=255) gAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTc > 7:195195/1‑144 (MQ=255) aCGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGttt < 1:102026/149‑1 (MQ=255) aCTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACt > 2:214065/1‑149 (MQ=255) cTCGATGAAGTGATCGAGACGGACGACGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAACGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACtg > 7:190328/1‑149 (MQ=255) gATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAACGGGGCGACCTTGGTCGCCCCgctcgggt > 8:324058/1‑138 (MQ=255) gATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAACGGGGCGACCTTGGTCGCCCCgctcgggt < 7:324058/145‑8 (MQ=255) tGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCg < 2:336649/149‑1 (MQ=255) gATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCAACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTg > 4:110957/1‑134 (MQ=255) gATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCAACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTg < 3:110957/134‑1 (MQ=255) agaCGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGATGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTg > 5:265937/1‑149 (MQ=255) agaCGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCCAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTg > 1:300982/1‑149 (MQ=255) agaCGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGc < 7:246743/121‑1 (MQ=255) agaCGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGc > 8:246743/1‑121 (MQ=255) ggacgAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCcg > 6:300488/1‑149 (MQ=255) ggaggGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGCCCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATg > 8:338041/1‑148 (MQ=255) ggaggGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGc < 5:99586/149‑1 (MQ=255) ggTGTCGAGGCTGTAGCGCCAGACAATGAAAACGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGgc < 8:190328/149‑1 (MQ=255) tgtCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCAAGCCcgc > 4:348745/1‑138 (MQ=255) tgtCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCAAGCCcgc < 3:348745/138‑1 (MQ=255) cGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGCCCAAGGTCGGCCCGGTTGACTGTGGTGGAGCGGGCTTGGCCGCGATGCAGgcggccc > 6:297424/1‑145 (MQ=255) gAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCAc < 5:297424/148‑1 (MQ=255) cTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATc > 3:287920/1‑149 (MQ=255) cgcCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCAt < 4:287920/149‑1 (MQ=255) aGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGc < 5:125097/116‑1 (MQ=255) aGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGc > 6:125097/1‑116 (MQ=255) aatgaaaatgaaGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGGGACCCAAGTAGCCCCGGTTTACTGTGTAGAATCGGGCTTGGCCCCGAAGCAGGAGCCCCCCATCCTGGATGGTAtgtg > 6:223462/1‑149 (MQ=255) aaatgaaGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGGCCCCTTTGCCTGTGTAGGATCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCAc > 7:138358/1‑149 (MQ=255) aatgaaGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGgc > 8:25428/1‑119 (MQ=255) aatgaaGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGgc < 7:25428/119‑1 (MQ=255) cTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAAtgtg < 4:312813/133‑1 (MQ=255) cTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAAtgtg > 3:312813/1‑133 (MQ=255) cgacgaGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTAt < 1:34142/149‑1 (MQ=255) gacgaGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTAtt > 5:196201/1‑149 (MQ=255) acgaGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTAttt < 2:152306/149‑1 (MQ=255) gCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGc > 1:108906/1‑147 (MQ=255) aaGAGTAAGTAAGCGTAAACCCGAGCGGGGCTACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCgaga < 3:8486/149‑1 (MQ=255) gtaagtaaGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTgg < 7:338041/149‑1 (MQ=255) aagtaagCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGa < 6:265937/148‑1 (MQ=255) aagCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGAtgt > 1:315135/1‑147 (MQ=255) agCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGa < 5:300488/148‑1 (MQ=255) agCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAg < 5:223462/149‑1 (MQ=255) agCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAg > 3:240232/1‑149 (MQ=255) gTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCcgcg > 3:163382/1‑63 (MQ=255) gTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCcgcg < 4:163382/63‑1 (MQ=255) aaaCCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATc > 2:303041/1‑79 (MQ=255) aaaCCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATc < 1:303041/79‑1 (MQ=255) cGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTgg < 3:204178/118‑1 (MQ=255) cGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTgg > 4:204178/1‑118 (MQ=255) cGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGcc > 2:30006/1‑149 (MQ=255) aacGGGGCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTg > 5:267232/3‑129 (MQ=255) aacGGGGCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTg < 6:267232/127‑1 (MQ=255) gCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCttt < 2:108906/149‑1 (MQ=255) gCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCtt > 8:251844/1‑148 (MQ=255) cGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTa < 4:240232/149‑1 (MQ=255) gCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAAtgtg < 2:169577/80‑1 (MQ=255) gACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCt < 7:251844/149‑1 (MQ=255) ccAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGAGTTTGTTCTAGTTGGCAGATGGAGAGTGGATGTGAGCAAACGAGCATTGATCTTCTgc > 8:278537/1‑149 (MQ=255) cAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTgcg > 4:105853/1‑149 (MQ=255) | AGCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCG > NC_002947/1973725‑1974018 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |