Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,134,927 | G→C | 7.4% | L608L (CTC→CTG) | fadE ← | medium‑long chain acyl‑CoA dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,134,927 | 0 | G | C | 7.4% | 169.0 / 3.5 | 54 | L608L (CTC→CTG) | fadE | medium‑long chain acyl‑CoA dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (26/24); new base C (2/2); total (28/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 |
GCCCAGGCTTTCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGCCCCAGGCCGTAGACCAAG > NC_002947/2134780‑2135071 | gCCCAGGCTTTCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGa < 4:279024/149‑1 (MQ=255) gCCCAGGCTTTCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGa < 1:38799/149‑1 (MQ=255) cAGGCTTTCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAgcg > 2:305125/1‑149 (MQ=255) gatttCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGccc > 8:204297/3‑149 (MQ=255) gCTTTCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGccc < 6:84553/149‑1 (MQ=255) ttcttcCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCcccac > 8:262466/1‑149 (MQ=255) ttcCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTCAAGCGC‑CGCGAGCGCCTCAGCGcccggcttg > 4:69927/1‑143 (MQ=38) tcCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCcag > 3:104368/1‑149 (MQ=255) ccATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTCAAGCGC‑CGCGAGCGCCTCAGCGcccggcttg < 3:69927/147‑7 (MQ=38) ccAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGGACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGcatc > 6:16355/1‑148 (MQ=255) cAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAgcgc > 4:146391/1‑131 (MQ=255) cAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAgcgc < 3:146391/131‑1 (MQ=255) cGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCgg < 5:157216/149‑1 (MQ=255) ggCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGc > 1:250669/1‑149 (MQ=255) gCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTCAAGCGC‑CGCGAGCGCCTCAGCGccc > 1:226424/1‑120 (MQ=38) gCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTCAAGCGC‑CGCGAGCGCCTCAGCGccc < 2:226424/120‑1 (MQ=38) ggTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATg < 1:305125/149‑1 (MQ=255) ttCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGATCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCa > 5:258367/1‑148 (MQ=255) gAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGc < 2:236877/131‑1 (MQ=255) gAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGc > 1:236877/1‑131 (MQ=255) cTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCt > 4:29905/1‑149 (MQ=255) gTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTgg < 2:156459/148‑1 (MQ=255) gTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGc > 3:154290/1‑149 (MQ=255) tCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCg < 7:197759/149‑1 (MQ=255) aTAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCa < 4:279354/149‑1 (MQ=255) gcgcTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAgg < 7:204297/148‑1 (MQ=255) cgcTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATAGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCGTGCGGTTCAGGgc > 1:138692/1‑149 (MQ=255) gggCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAg < 4:154290/149‑1 (MQ=255) gcTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCtt > 8:177097/1‑149 (MQ=255) cTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTg < 3:29905/149‑1 (MQ=255) tGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTgg > 1:44356/1‑149 (MQ=255) gCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTgg < 2:44356/147‑1 (MQ=255) gCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTgg < 7:262466/147‑1 (MQ=255) gAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCt > 2:123706/1‑147 (MQ=255) aGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAg < 8:101930/149‑1 (MQ=255) aCAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTgg < 8:24034/113‑1 (MQ=255) aCAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTgg > 7:24034/1‑113 (MQ=255) tAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGcc < 2:250669/149‑1 (MQ=255) gCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGGCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCg < 5:16355/149‑1 (MQ=255) cacaTCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCAccc > 4:68379/1‑149 (MQ=255) tCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCt > 2:101524/1‑148 (MQ=255) cGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCgggg < 6:93820/129‑1 (MQ=255) cGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCgggg > 5:93820/1‑129 (MQ=255) ccAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAg > 8:66741/1‑101 (MQ=255) ccAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAg < 7:66741/101‑1 (MQ=255) ccAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAgg < 1:247124/126‑1 (MQ=255) ccAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAgg > 2:247124/1‑126 (MQ=255) ccAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCa > 6:248891/1‑147 (MQ=255) ccGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGAc > 8:179804/1‑149 (MQ=255) aGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGcccc < 6:258367/147‑1 (MQ=255) ggCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGCCCCAgg > 1:179875/1‑149 (MQ=255) tCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGCCCCAGGCCg > 5:154074/1‑147 (MQ=255) gcg‑gcgCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGCCCCAGGCCGTAGa > 1:356398/1‑149 (MQ=255) gcTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGCCCCAGGCCGTAGACCAAg < 1:123706/149‑1 (MQ=255) | GCCCAGGCTTTCTTCCATGGCCCAGCGCAGCAGCGGCTGCAGGTATTCGGGCGAGCCCTGGTCGTGATAGCGCTTCAGGGCAGCGCTGGCGAGGTACAGATAGCTCAGCACATCGCCAAGCCGGGCGCTGAGGCGCTCGCG‑GCGCTTGAGCGCCCCACCCAGCAGCATCATCGAAAGGTCGGCCATCATGGCAAACGCCGCCGCCTGGCGGTTCAGGGCGCGGAAGTAGCCTTGGCTCAGGGCATCGCCCGGCACCCGCTCAAAGCGACCCAGCCCCAGGCCGTAGACCAAG > NC_002947/2134780‑2135071 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |