Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,246,241 | C→T | 8.6% | intergenic (+30/+61) | ibpA → / ← PP_1983 | small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,246,241 | 0 | C | T | 8.6% | 164.2 / 4.3 | 58 | intergenic (+30/+61) | ibpA/PP_1983 | small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase |
Reads supporting (aligned to +/- strand): ref base C (28/25); new base T (2/3); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.29e-01 |
AGGCCGCCGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATGG > NC_002947/2246099‑2246389 | aGGCCGCCGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGt < 4:237933/149‑1 (MQ=255) ccgccgGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGcc > 5:85436/1‑149 (MQ=255) ccgccgGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGcc < 1:96799/149‑1 (MQ=255) ggCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑tttt < 6:85436/149‑1 (MQ=255) gCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCAAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCTGGAGGTGCCC‑‑tttttttcgt < 6:234585/149‑6 (MQ=255) cAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTc > 5:244250/1‑143 (MQ=255) cAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTc < 6:244250/143‑1 (MQ=255) aGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTccc < 6:109055/149‑1 (MQ=255) aCCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCagag > 6:294426/1‑111 (MQ=255) aCCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCagag < 5:294426/111‑1 (MQ=255) aCCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAg‑g > 1:71406/1‑149 (MQ=255) aCCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGATGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAg‑g > 7:266436/1‑149 (MQ=255) ctgctgCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCTGGAGGTGCCC‑‑ttt > 8:12097/1‑118 (MQ=255) ctgctgCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCTGGAGGTGCCC‑‑ttt < 7:12097/118‑1 (MQ=255) ctgctgCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTc > 2:199064/1‑138 (MQ=255) ctgctgCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTc < 1:199064/138‑1 (MQ=255) gcATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCcgcg > 5:350576/1‑136 (MQ=255) gcATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCcgcg < 6:350576/136‑1 (MQ=255) gcATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGcc < 6:84355/149‑1 (MQ=255) cATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTa > 7:173284/1‑137 (MQ=255) cATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTa < 8:173284/137‑1 (MQ=255) tGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATg > 1:177803/1‑149 (MQ=255) cTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGa > 6:133430/1‑149 (MQ=255) agaagCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCa < 2:177803/148‑1 (MQ=255) gccaaggccaatCGAATTCCTATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAAt < 6:356635/149‑1 (MQ=255) ccaaggccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATc < 2:71406/149‑1 (MQ=255) caaggccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAg > 4:227718/1‑120 (MQ=255) caaggccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAg < 3:227718/120‑1 (MQ=255) gccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCg > 1:338114/1‑149 (MQ=255) aagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGgcg > 4:180017/1‑149 (MQ=255) aagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGgcg > 2:224237/1‑149 (MQ=255) gcATTCCTATAAATTGAGAAAAACCAGCGCTTAACTTATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCTTCATGCTATCTGTAATCTGCCGGCGCCTc < 8:266436/149‑1 (MQ=255) aTTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCa < 6:38878/129‑1 (MQ=255) aTTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCa > 5:38878/1‑129 (MQ=255) ttCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAg < 2:338114/149‑1 (MQ=255) gATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCaa > 2:30799/1‑148 (MQ=255) aTGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGcc > 4:158618/1‑65 (MQ=255) aTGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGcc < 3:158618/65‑1 (MQ=255) aTGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTtctc < 1:18894/81‑1 (MQ=255) aTGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTtctc > 2:18894/1‑81 (MQ=255) tGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTc > 6:252887/1‑109 (MQ=255) tGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTc < 5:252887/109‑1 (MQ=255) gCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCg < 5:133430/149‑1 (MQ=255) aaaaaCCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGaaa < 3:180017/149‑1 (MQ=255) cAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCATCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCACCATCTGCCGAAACTCcgg > 3:204566/1‑149 (MQ=255) gAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCcggtaacgg > 4:9860/1‑148 (MQ=255) tGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGAGAGTCGGGGCCGTGATTGGGTGAATAATGTTCCCGCGGCTGCCGCAACATGTGCCGGAAAGCCGGTAACGGTAATGGCCgggt > 1:286099/1‑147 (MQ=255) cAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCcgtg > 8:201186/1‑148 (MQ=255) aaCGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCtgtg > 7:168863/1‑147 (MQ=255) aCGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTc < 3:17755/74‑1 (MQ=255) aCGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTc > 4:17755/1‑74 (MQ=255) aCGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAg < 3:9860/149‑1 (MQ=255) cGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAg > 3:188096/1‑148 (MQ=255) aaaaaaaGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGAt > 2:200994/1‑148 (MQ=255) aaGGGCACCTCTGGAGGTGCCCTTTTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAAcc > 4:5096/1‑149 (MQ=255) gggCACCTCTGGAGGTGCCCTTTTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCt < 3:5096/149‑1 (MQ=255) gggCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCCGTGCAGATAACCCTgg < 7:201186/149‑1 (MQ=255) cTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTa > 3:312134/1‑145 (MQ=255) cAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATgg > 7:227042/1‑149 (MQ=255) cAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATgg < 8:227042/149‑1 (MQ=255) | AGGCCGCCGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAG‑GTG‑CGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATGG > NC_002947/2246099‑2246389 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |