| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,273,874 | G→C | 7.7% | P165A (CCG→GCG) ‡ | PP_2004 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,273,874 | 0 | G | C | 7.7% | 414.4 / 19.1 | 130 | P165A (CCG→GCG) ‡ | PP_2004 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (56/64); new base C (6/4); total (62/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-01 | |||||||||||
Only 100 of 135 total aligned reads displayed.
CCGGGGTTGGCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGG > NC_002947/2273726‑2274019 | ccGGGGTTGGCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGACCTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCgg > 2:94442/1‑149 (MQ=255) cGGGGTTGGCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCggg < 5:303223/149‑1 (MQ=255) cGGGGTTGGCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCggg > 5:199615/1‑149 (MQ=255) gggTTGGCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGt < 6:123315/149‑1 (MQ=255) gCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCgg < 2:276032/148‑1 (MQ=255) gCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGc < 4:192941/149‑1 (MQ=255) gCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCGGCACCCCGGTGCAGGc < 5:298762/149‑1 (MQ=255) gCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACACGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCATTAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCg < 1:94442/148‑1 (MQ=255) ccAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCGGCACCCCGGTGCAGGcc < 5:177714/149‑1 (MQ=255) gTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGc > 6:321415/1‑149 (MQ=255) gTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGc < 6:140746/149‑1 (MQ=255) ttGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCt > 7:313514/1‑149 (MQ=255) cAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCgg > 2:69395/1‑149 (MQ=255) cAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCgg > 4:205758/1‑149 (MQ=255) cAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCgg < 3:19041/149‑1 (MQ=255) cAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCg < 4:176911/148‑1 (MQ=255) tAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAAc < 3:352193/149‑1 (MQ=255) aGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACt > 5:130057/1‑149 (MQ=255) gcgGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTggg < 7:191393/149‑1 (MQ=255) cgGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGc < 3:2525/135‑1 (MQ=255) cgGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGc < 3:7467/135‑1 (MQ=255) cgGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGc > 4:7467/1‑135 (MQ=255) cgGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGc > 4:2525/1‑135 (MQ=255) ggCTCAGACGCAGTTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGgcc < 1:266411/149‑1 (MQ=255) cTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGgccag > 3:77700/1‑149 (MQ=255) aGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCTTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGgccagc < 6:324983/147‑1 (MQ=255) gACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGccagccag > 2:149023/1‑149 (MQ=255) cGCATCTGATTGCCTTCGGAGGCGAACTGCACAGGATTGCTGCAAAGCGGTTGATAGAGCTCGGCA‑TAGTAGTGCGCGGGAATCTCTATGTCCAGGCGTTCTTCCTGAACAGGGGTGCCTTCCAGCTGGGCGAACTGGGCGagacatcc < 8:4187/149‑1 (MQ=255) cTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCca < 4:135060/149‑1 (MQ=255) gATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCcag > 4:56253/1‑148 (MQ=255) ttGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCcagcag > 3:82311/1‑149 (MQ=255) tGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGgccagc > 1:4172/1‑134 (MQ=255) tGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGgccagc < 2:4172/134‑1 (MQ=255) gCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGt < 3:56253/148‑1 (MQ=255) ccGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCggg < 7:291263/102‑1 (MQ=255) ccGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCggg > 8:291263/1‑102 (MQ=255) ccGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTg < 7:199566/148‑1 (MQ=255) ggcggcGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGa < 7:15377/149‑1 (MQ=255) gcggcgAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGAc < 1:9683/149‑1 (MQ=255) cggcgAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGAc > 6:130370/1‑148 (MQ=255) ggcgAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACca < 5:321415/149‑1 (MQ=255) cTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGa < 4:107517/140‑1 (MQ=255) cTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGa > 3:107517/1‑140 (MQ=255) cTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGc > 8:172396/1‑149 (MQ=255) tGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCg < 6:152713/149‑1 (MQ=255) tGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCg > 2:274630/1‑149 (MQ=255) cacaGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGgc < 8:97979/111‑1 (MQ=255) acaGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGtt < 1:69395/149‑1 (MQ=255) acaGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGtt < 8:313514/149‑1 (MQ=255) aGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGt > 1:104469/1‑127 (MQ=255) gctgcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGtt > 5:137826/1‑141 (MQ=255) gctgcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGt > 8:229869/1‑149 (MQ=255) ctgcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGtt < 6:130057/149‑1 (MQ=255) tgcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCcagccagc < 6:203860/108‑1 (MQ=255) tgcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCcagccagc > 5:203860/1‑108 (MQ=255) tgcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCg > 2:55288/1‑136 (MQ=255) gcAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGt < 6:108161/149‑1 (MQ=255) cAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTg > 7:9947/1‑147 (MQ=255) aaaGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAg > 6:100914/1‑149 (MQ=255) aaGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTa < 3:244957/147‑1 (MQ=255) aaGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTa > 4:244957/1‑147 (MQ=255) aaGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAgg > 4:94660/1‑149 (MQ=255) gCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAgggg < 1:149023/149‑1 (MQ=255) cGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 4:65489/149‑1 (MQ=255) aTAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATg < 5:65799/148‑1 (MQ=255) gcgcgcGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGaa < 1:34652/148‑1 (MQ=255) cgcgcgGGA‑TAGGAGGGCGCGGCAAAGTCGATCTCCAGGCGTTCGGCCTGCACGGGGGTGCCGGCCAGCTGGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTTGTCGTTGTAGTGGCTGATGGAATa < 1:54361/149‑1 (MQ=255) cgcgcgGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATa < 5:130370/149‑1 (MQ=255) gcgcgGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGGTGTAGTCGTTGTAGGGGCTGATGGaa > 4:8632/1‑146 (MQ=255) aggaggGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAg > 7:4219/1‑107 (MQ=255) cAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAgc < 1:24576/132‑1 (MQ=255) cAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTgg < 1:274630/149‑1 (MQ=255) cAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGCCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGAAGTCGTAGTAGGGGCTGAAGGAATAGAAgc > 2:24576/1‑132 (MQ=255) aaaCTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTggg > 7:271038/1‑149 (MQ=255) tCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTggg < 3:163279/145‑1 (MQ=255) gATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATc < 3:94660/147‑1 (MQ=255) aTCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGa > 4:88523/1‑74 (MQ=255) gTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCgg < 8:231457/149‑1 (MQ=255) tggCCGGCACCCCGGTGCAGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGaa > 4:143281/2‑149 (MQ=255) cGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGaa > 4:103454/1‑149 (MQ=255) cGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGa < 7:229869/148‑1 (MQ=255) ggCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGa > 2:279020/1‑147 (MQ=255) ggCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGa < 1:279020/147‑1 (MQ=255) ggCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAAt > 5:256025/1‑149 (MQ=255) ggCCGGCACCCCGGTGCAGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTggg < 7:283328/128‑1 (MQ=255) ggCCGGCACCCCGGTGCAGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAAt > 6:16477/1‑149 (MQ=255) gCCGGCACCCCGGTGCAGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTc < 7:87176/134‑1 (MQ=255) gCCGGCACCCCGGTGCAGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTc > 8:87176/1‑134 (MQ=255) gCCGGCACCCCGGTGCAGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTGCCTCAAAGCGGGAATg > 6:258390/1‑149 (MQ=255) cTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCg > 6:233407/1‑141 (MQ=255) cTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCg < 5:233407/141‑1 (MQ=255) tGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGcc > 3:188873/1‑149 (MQ=255) tGCACCGGGGTGCCGACCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGcc > 3:305419/1‑149 (MQ=255) gCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGCCTGGCcg > 6:338485/1‑149 (MQ=255) cACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCcg < 8:271038/148‑1 (MQ=255) aCCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTgg > 3:248945/1‑120 (MQ=255) aCCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTgg < 4:248945/120‑1 (MQ=255) cGGGGTGCCGGCCAGCTCGGCCAACTGGGCCTGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCgg > 2:126353/1‑148 (MQ=255) cGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCt < 7:168664/128‑1 (MQ=255) cGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCt > 8:168664/1‑128 (MQ=255) | CCGGGGTTGGCCAGTTGCAAGGTAGCGCGGCTCAGACGCAGCTGATTGCCGTCGGCGGCGAACTGCACAGGCGTGCTGCAAAGCGGTTGATAGCGCGCGGCA‑TAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGG > NC_002947/2273726‑2274019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |