Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,397,182 G→T 9.8% D825E (GAC→GAA PP_2100 ← two‑component system sensor protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,397,1820GT 9.8% 294.1 / 20.1 103D825E (GAC→GAAPP_2100two‑component system sensor protein
Reads supporting (aligned to +/- strand):  ref base G (49/43);  new base T (6/4);  total (56/47)
Fisher's exact test for biased strand distribution p-value = 7.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.91e-02

Only 100 of 107 total aligned reads displayed.

CCACTGTCGCGCACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCG  >  NC_002947/2397036‑2397329
                                                                                                                                                  |                                                                                                                                                   
ccACTGTCGCGCACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTc                                                                                                                                                   <  6:38451/149‑1 (MQ=255)
        gcgcACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTc                                                                                                                                                   >  3:293476/1‑141 (MQ=255)
        gcgcACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTc                                                                                                                                                   <  4:293476/141‑1 (MQ=255)
         cgcACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGACCCGCTGCGCTTCAAGCAggtg                                                                                                                                          <  8:285012/149‑3 (MQ=255)
         cgcACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGa                                                                                                                                           >  4:12484/1‑148 (MQ=255)
          gcACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACa                                                                                                                                         <  8:191903/149‑1 (MQ=255)
           cACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGACCCGCTGCGCTTCAAGCAggtgct                                                                                                                                        <  5:277211/149‑5 (MQ=255)
               tccagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGa                                                                                                                                           >  2:304974/1‑142 (MQ=255)
               tccagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGa                                                                                                                                           <  1:304974/142‑1 (MQ=255)
               tccagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATgg                                                                                                                                      >  6:43319/1‑147 (MQ=255)
               tccagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGATGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGACCCGCTGCGCTTCAAGCAggt                                                                                                                                           <  3:79370/142‑2 (MQ=255)
               tccagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGATGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGACCCGCTGCGCTTCAAGCAggt                                                                                                                                           >  4:79370/1‑141 (MQ=255)
                 cagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGc                                                                                                                                  <  3:25714/149‑1 (MQ=255)
                 cagctccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGc                                                                                                                                  >  4:21370/1‑149 (MQ=255)
                      ccagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCg                                                                                                                             >  7:33982/1‑149 (MQ=255)
                       cagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCgg                                                                                                                            <  5:363682/149‑1 (MQ=255)
                       cagTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCgg                                                                                                                            >  3:300404/1‑149 (MQ=255)
                       cagTACGGCTGGTGTACTGGTTCCGGCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCg                                                                                                                             <  2:315113/148‑1 (MQ=255)
                        agTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAAGACATGGCAGCGTGCGGc                                                                                                                           >  8:192709/1‑149 (MQ=255)
                         gTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGcc                                                                                                                          >  4:114693/1‑149 (MQ=255)
                            cGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAgg                                                                                                                                            >  2:52547/1‑128 (MQ=255)
                            cGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAgg                                                                                                                                            <  1:52547/128‑1 (MQ=255)
                            cGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCggg                                                                                                                       <  1:23593/149‑1 (MQ=255)
                            cGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCgg                                                                                                                        <  1:118428/148‑1 (MQ=255)
                             ggCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAAGACATGGCAGCGTGCGGCCgggg                                                                                                                      <  7:192709/149‑1 (MQ=255)
                                 ggTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGAt                                                                                                                  >  5:369041/1‑149 (MQ=255)
                                    gtgCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCggg                                                                                                                                                     <  4:38053/111‑1 (MQ=255)
                                    gtgCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCggg                                                                                                                                                     >  3:38053/1‑111 (MQ=255)
                                       cTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCa                                                                                                             >  5:108220/1‑148 (MQ=255)
                                       cTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCAc                                                                                                            <  7:179410/149‑1 (MQ=255)
                                       cTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCAc                                                                                                            >  6:41970/1‑149 (MQ=255)
                                        tGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCAcc                                                                                                           >  6:214943/1‑149 (MQ=255)
                                        tGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCAcc                                                                                                           >  8:103623/1‑149 (MQ=255)
                                          gTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCt                                                                                                                <  3:305894/142‑1 (MQ=255)
                                          gTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCt                                                                                                                >  4:305894/1‑142 (MQ=255)
                                          gTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTc                                                                                                         >  3:141771/1‑149 (MQ=255)
                                           ttCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTcc                                                                                                        <  2:98690/149‑1 (MQ=255)
                                               gTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAggg                                                                                                    >  5:126346/1‑149 (MQ=255)
                                                tCATCCAGCAGCCTGACGCTGAAGCGCACCTGACCGTGCTCGGTGAACTTGATGCCATTGCTCACCAGGATGGACAGCACCTCCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGCGGCGATCTGCACCTCCAGGGc                                                                                                   >  3:42003/1‑149 (MQ=255)
                                                   tCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAg                                                                                                <  5:41970/149‑1 (MQ=255)
                                                    ccAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAgg                                                                                               >  6:109086/1‑149 (MQ=255)
                                                    ccAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAgg                                                                                               >  3:161120/1‑149 (MQ=255)
                                                      agcagcCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGcc                                                                                             >  2:181606/1‑149 (MQ=255)
                                                       gcagcCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCt                                                                                            >  5:62270/1‑149 (MQ=255)
                                                        cagcCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCt                                                                                                                <  2:265195/128‑1 (MQ=255)
                                                        cagcCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCAGTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCt                                                                                                                >  1:265195/1‑128 (MQ=255)
                                                           ccTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCt                                                                                        <  4:161120/149‑1 (MQ=255)
                                                             tGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTg                                                                                                                               <  1:110271/108‑1 (MQ=255)
                                                             tGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGAAGCGTg                                                                                                                               >  2:110271/1‑108 (MQ=255)
                                                              gACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAg                                                                                                <  4:300131/138‑1 (MQ=255)
                                                                 gCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCcgcg                                                                                  >  8:48142/1‑149 (MQ=255)
                                                                  cTGATGCGCACCTGACCGTGCTCGGTTAACTTGATTGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCgcgc                                                                                 <  3:114693/149‑1 (MQ=255)
                                                                  cTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCgcgc                                                                                 <  6:86552/149‑1 (MQ=255)
                                                                         gcACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCa                                                                          >  4:132925/1‑149 (MQ=255)
                                                                          cACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCAt                                                                         <  5:43319/149‑1 (MQ=255)
                                                                           aCCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATc                                                                        >  6:199881/1‑149 (MQ=255)
                                                                                aCCGTGCTCGGGGAACTTGATGGCATTTCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGGGCGGCCTGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGaa                                                                     <  5:329582/147‑1 (MQ=255)
                                                                                  cGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATg                                                                 >  3:344004/1‑149 (MQ=255)
                                                                                     gCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATgcgc                                                              >  8:267366/1‑149 (MQ=255)
                                                                                       tCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATgcgcgc                                                            >  5:116372/1‑149 (MQ=255)
                                                                                        aggTGAAGTTGATGGCATAGCTGACAAGGTTGGACAGCACCTGCTTGAAGAGCAGCCCGTCAAGCAGGACAATGCAGCGTGCGGCAGGGGCGATCTGAACCTCCAGTGCCAGGCCGTTCTGCCGCGCCTGACCATCGAAAATgcgagca                                                           >  6:79958/2‑148 (MQ=255)
                                                                                         ggTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCa                                                          >  5:103024/1‑149 (MQ=255)
                                                                                           tGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCAcc                                                        <  3:12484/149‑1 (MQ=255)
                                                                                             aaCTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCg                                                       <  6:126346/148‑1 (MQ=255)
                                                                                               cTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGAtt                                                    <  6:62270/149‑1 (MQ=255)
                                                                                                ttGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTc                                                   >  6:156631/1‑149 (MQ=255)
                                                                                                  gATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCg                                                  <  3:21370/148‑1 (MQ=255)
                                                                                                    tGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGAc                                                <  7:81653/148‑1 (MQ=255)
                                                                                                       cATTGCTAACCAGGTTTGACAGCACGTGGTTGAAGCGCAGCGTGTCATGCATGACATGGCAGCGTGGGGCCGGGGCGATCTGGAGCTCCATGGCCAGGCCTTTCTGGCGCGCCTGACCATCGTAAATGCGCGCCACCGATTCGACCAg                                             <  4:42003/148‑1 (MQ=255)
                                                                                                         ttGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAgcgc                                          <  7:48142/149‑1 (MQ=255)
                                                                                                              cACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCAACGAAAATGCGCGCCACCGATTCGACCAGcgccgc                                       >  1:272146/1‑147 (MQ=255)
                                                                                                               aCCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGCCCAGCGCCGCCAg                                    >  7:166917/1‑149 (MQ=255)
                                                                                                                ccAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCa                                                          >  8:336710/1‑126 (MQ=255)
                                                                                                                 cAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGt                                  >  7:192013/1‑149 (MQ=255)
                                                                                                                 cAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGt                                  <  5:109086/149‑1 (MQ=255)
                                                                                                                    gTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGa                               <  6:369041/149‑1 (MQ=255)
                                                                                                                    gTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGa                               <  4:141771/149‑1 (MQ=255)
                                                                                                                    gTTGGACAGCACCTGCTTGAAGCGCAGCGGCTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGa                               >  1:32038/1‑149 (MQ=255)
                                                                                                                    gTTGGACAGCACCTGCTTGAAGCCCAGCGGGTCAACCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCATGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGa                               >  6:181775/1‑149 (MQ=255)
                                                                                                                     ttGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGac                              <  1:181606/149‑1 (MQ=255)
                                                                                                                         aCAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGTCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGaatcgg                          >  6:155819/1‑144 (MQ=255)
                                                                                                                          catgtccTGCTTGACCCGCTGCGCTTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCt                         >  1:39947/6‑149 (MQ=255)
                                                                                                                            tgtccTGCTTGACCCGCTGCGCTTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTcc                       >  2:70522/4‑149 (MQ=255)
                                                                                                                             gtccTGCTTGACCCGCTGCGCTTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCg                      >  7:43895/3‑149 (MQ=255)
                                                                                                                             cACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCg                      >  1:54380/1‑149 (MQ=255)
                                                                                                                               ccTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCggg                    >  7:37480/1‑149 (MQ=255)
                                                                                                                                cTGCTTGACCCGCTGCGCTTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCAcc                                                        <  7:284728/112‑1 (MQ=39)
                                                                                                                                cTGCTTGACCCGCTGCGCTTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCAcc                                                        >  8:284728/1‑112 (MQ=39)
                                                                                                                                cTGCTTGACCCGCTGCGCTTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCgggg                   >  5:282062/1‑149 (MQ=255)
                                                                                                                                cTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCgggg                   >  6:149792/1‑149 (MQ=255)
                                                                                                                                   cTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAgc                                            <  5:163362/121‑1 (MQ=255)
                                                                                                                                   cTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAgc                                            >  6:163362/1‑121 (MQ=255)
                                                                                                                                    ttGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGAACTGCACCTCCAGGGCCAGGACAATCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTAGAACACCTCCGGGGCCAg               >  2:297921/1‑149 (MQ=255)
                                                                                                                                       aaGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATgcgcgc                                                            >  7:193071/1‑101 (MQ=255)
                                                                                                                                       aaGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATgcgcgc                                                            <  8:193071/101‑1 (MQ=255)
                                                                                                                                       aaGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGGGCCAggg             <  7:103623/148‑1 (MQ=255)
                                                                                                                                        aGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGGGCCAGGGa            >  1:337028/1‑148 (MQ=255)
                                                                                                                                        aGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGGGCCAGGGa            <  2:337028/148‑1 (MQ=255)
                                                                                                                                          cgcAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGGGCCAGGGACaa         <  5:149792/149‑1 (MQ=255)
                                                                                                                                                 ggTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGTGCCAGGGACAAGTGCCCg  <  5:199881/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CCACTGTCGCGCACCTCCAGCTCCAGTACGGCTGGTGTGCTGGTTCCGTCATCCAGCAGCCTGACGCTGATGCGCACCTGACCGTGCTCGGTGAACTTGATGGCATTGCTCACCAGGTTGGACAGCACCTGCTTGAAGCGCAGCGGGTCAAGCAGGACATGGCAGCGTGCGGCCGGGGCGATCTGCACCTCCAGGGCCAGGCCTTTCTGCCGCGCCTGACCATCGAAAATGCGCGCCACCGATTCGACCAGCGCCGCCAGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCG  >  NC_002947/2397036‑2397329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: