| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,628 | C→T | 10.6% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,628 | 0 | C | T | 10.6% | 218.2 / 14.3 | 95 | D378D (GAC→GAT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (39/45); new base T (4/6); total (43/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 | |||||||||||
CGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAA > NC_002947/195487‑195773 | cGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcaccccca > 7:108780/1‑149 (MQ=38) ccAGCCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGa > 4:137418/1‑149 (MQ=255) cAGACCCCGGTCAATGACGTCTAAAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGGCACCGGCTGTAATTTCGAGCAACTGACCCTGAATC‑CGACCCCGGCTCAGACCTCGATCAACGACTCGGTCGACACCACCACCGCGa < 1:121504/148‑1 (MQ=14) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAc > 8:38185/1‑149 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 7:38185/149‑1 (MQ=39) gACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAccc < 7:329452/149‑1 (MQ=39) cgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCTCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAcc < 4:251556/138‑1 (MQ=2) cgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAcc > 3:251556/3‑140 (MQ=2) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc > 2:38665/1‑149 (MQ=37) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAg < 4:120318/148‑1 (MQ=17) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGcc > 4:263327/1‑149 (MQ=17) gACGTCTACAACAACGGATCGACCGTCAGCGTCACCAACGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACACCGCATC‑CGACCCCGCCTCAGCCCACGATCAACCACTCGCACGACACCACTAACGCGAACCTGACGGCGAcccc > 6:153095/1‑149 (MQ=11) ctgcTACAACAACGGGTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGACCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGt < 8:153975/146‑1 (MQ=255) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGt < 5:242892/149‑1 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAg > 3:127000/1‑143 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAg < 4:127000/143‑1 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTc > 8:21826/1‑149 (MQ=17) tCTACAACTACGGTTCGACCGTCAGCGTCACCATCGAGAAGGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAGCCTGACGGCGAGCCCGTCg < 5:153095/149‑1 (MQ=11) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACTCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 5:177660/149‑1 (MQ=12) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCg < 6:72302/149‑1 (MQ=37) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGt > 5:187464/1‑149 (MQ=17) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTc < 1:38665/148‑1 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:337889/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 6:187464/149‑1 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:227479/1‑149 (MQ=12) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 3:137418/149‑1 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 3:116917/149‑1 (MQ=17) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg > 3:226697/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTTGAGCAACTAACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 6:125669/1‑149 (MQ=255) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:37876/148‑1 (MQ=17) ccccGGCAGCGGCACCATCCAGCACGCCACCGGCGGTAATTGCGAGCAACTGACCCCGAATC‑CGCCCCCGGCTCAGACCACGATCAACGACGCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 4:27426/147‑1 (MQ=11) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 6:314745/1‑149 (MQ=37) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGCCCACGATCAACGACTCCGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 7:245358/1‑148 (MQ=255) cAGCGTTACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 5:288731/1‑147 (MQ=12) cAGCGTTACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 6:288731/147‑1 (MQ=12) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc > 4:249943/1‑147 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 3:249943/147‑1 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 3:263327/148‑1 (MQ=17) gcttCACCATCGAGAACGCCACAGTCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 6:227479/146‑1 (MQ=255) cGTCACCATCGAGAACGCCACTGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 1:320512/149‑1 (MQ=17) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGCTCAACGACTCGGACGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGCAGGCGGCGTGATCACt > 7:179951/1‑148 (MQ=11) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac < 7:21826/149‑1 (MQ=17) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 5:90275/149‑1 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGACTC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACCCCACCACAGCGACCCTGCCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:59016/1‑149 (MQ=255) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 8:143157/1‑149 (MQ=39) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 4:35990/1‑149 (MQ=17) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCCCGATCAACGACTCGGTCGACACCCCCACCGCGACCCTGACGGCCAGCCCGTCGGTCACCGAAGGCGGAGTGATGCCTTACACCGTGAcc > 8:176100/1‑149 (MQ=14) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 4:337889/149‑1 (MQ=39) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 5:34527/1‑149 (MQ=39) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 3:35990/149‑1 (MQ=17) accGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 5:314745/147‑1 (MQ=39) cGCCACTGGTGGTAATTTCGTGCTAGTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCTGTCGACACCAGTACCGCGACCCTGACGGGGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:179951/149‑1 (MQ=11) cACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 3:225607/1‑148 (MQ=39) cACCGGCGGGAATTACGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGACGCCACCCCACCCGCGACCCTGCCGGCGCGCCCGTGGGGCACCGTAGGCCGCGTCAGCACGTCCCCCGTGACCCTGCGCa > 4:182104/1‑149 (MQ=11) ccGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc < 4:226697/149‑1 (MQ=39) cggcggTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc > 3:201074/1‑149 (MQ=39) aggcggTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGTGTGATCACTTACACCGTGACCCTGAGCAAcc < 7:261936/148‑1 (MQ=18) ggcggTAATTTCTAGCAACTGACCCCGAATC‑CGAACCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACAGTGACCCTGAGCAAcc < 2:214262/148‑1 (MQ=255) gcggTAATTTCGAGCAACTGACCCCGAATCGCGACCCCGGCTCAGACAACGATCAAAGACTCGGTCGACACAACCACCGCGACCATGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACACCGTGACCATGAGCaaac > 1:214262/1‑146 (MQ=11) ggTAATTTCGAGCTACTGCCCCCGAATC‑CGACCCCGGCTCAGACCCCGATCAACGACTCGGTCGAGACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGCCCCTGAGCAACCCTGc < 6:94527/149‑1 (MQ=11) ggTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc > 6:151569/1‑149 (MQ=17) aaTTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa > 1:305458/1‑149 (MQ=17) ttCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGGGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa < 2:305458/148‑1 (MQ=12) ttCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 2:104559/1‑99 (MQ=37) gAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGcc < 5:247019/149‑1 (MQ=17) gAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 7:143157/148‑1 (MQ=39) aGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTCCCCAGACGCCg > 4:245615/1‑149 (MQ=21) aGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 6:34527/149‑1 (MQ=39) gCAACTGACCCCGAAGC‑CGCCCCCGGCTCTGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg < 8:228055/149‑1 (MQ=11) aCTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTaa > 7:288317/1‑149 (MQ=25) aCTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTaa > 3:210724/1‑149 (MQ=40) aCTGACCCCGAATC‑CGACCCCGGATCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTaa < 4:228103/149‑1 (MQ=255) cTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTCCCCAGACGCCGGTAAc < 3:245615/149‑1 (MQ=255) tGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc > 5:156491/1‑149 (MQ=2) gACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCg > 1:193040/1‑149 (MQ=38) aCCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc < 5:151569/147‑1 (MQ=2) aCCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc < 8:269794/147‑1 (MQ=2) aCCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt > 6:12251/1‑149 (MQ=12) cccGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt < 5:164383/147‑1 (MQ=255) cccGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 6:164383/1‑147 (MQ=255) ccGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGANCAACCCTGCCCAGACGCCGGTGACCGTGac < 1:33847/149‑2 (MQ=9) ccGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 3:101085/1‑149 (MQ=255) ccGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 8:108780/149‑1 (MQ=255) cGAATC‑CGACCCCGGCTCATACCACTATCAACGACTCGGTCGACACCACCACCTCTTCCCTGACTGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 7:31499/149‑1 (MQ=14) aaTC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCt < 4:225891/149‑1 (MQ=255) tC‑CGACCGCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGAGGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 3:294328/149‑1 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACAACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa > 3:79304/1‑149 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 3:280262/1‑149 (MQ=37) ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc < 2:193040/149‑1 (MQ=37) cAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCATGAACCTGTCCAACGGCCAAAc > 3:242430/1‑149 (MQ=255) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACAGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 2:297025/1‑149 (MQ=21) tCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 4:101085/149‑1 (MQ=39) cTCGGTCGACAGCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCTCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCATACGATTACCGGTGAAGCgg < 8:245358/149‑1 (MQ=14) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCg > 4:285379/1‑107 (MQ=25) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCg < 3:285379/107‑1 (MQ=25) gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 5:125669/148‑1 (MQ=39) | CGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC‑CGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAA > NC_002947/195487‑195773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |