| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,456,782 | T→C | 5.4% | intergenic (+33/‑148) | gapB → / → PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,456,782 | 0 | T | C | 5.4% | 327.4 / 4.1 | 109 | intergenic (+33/‑148) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (51/52); new base C (3/3); total (54/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 109 total aligned reads displayed.
GACAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACC > NC_002947/2456636‑2456924 | gACAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTc < 7:145385/149‑1 (MQ=255) aCAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCg < 7:18637/149‑1 (MQ=255) aaCCGCGTTGTTCTGTACGTCTGGTATGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCggg > 6:15688/1‑149 (MQ=255) ccGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGtt > 5:210980/1‑149 (MQ=255) cgTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCgg > 8:28420/1‑143 (MQ=255) ttgttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑t > 8:152225/1‑149 (MQ=255) tgttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑tt > 7:269647/1‑149 (MQ=255) gttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTATGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑tta > 5:342535/1‑148 (MQ=255) gttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑t < 6:342535/147‑1 (MQ=255) tGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttttttt > 6:19310/1‑149 (MQ=255) tGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttttttt > 6:69065/1‑149 (MQ=255) aCGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTa > 2:184429/1‑149 (MQ=255) cGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTAt > 6:237984/1‑149 (MQ=255) gTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATTGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAATAACGGCAACCTTCGGGTTCCCG‑TTTTTTTTTAtt < 1:228174/149‑1 (MQ=255) cTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGATGGT‑‑GTGAAGCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCATTGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCt > 8:288154/1‑149 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTAAGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCt > 1:103393/1‑149 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTc < 6:293010/146‑1 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTc > 5:293010/1‑146 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTg > 3:150493/1‑148 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTg > 6:82300/1‑148 (MQ=255) gTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCt < 6:89130/146‑1 (MQ=255) tACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GGGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAt < 7:84607/149‑1 (MQ=255) cAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtgtg > 5:91436/1‑149 (MQ=255) aCGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgtt < 7:41735/149‑1 (MQ=255) cGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGtgtt > 1:271050/1‑149 (MQ=255) cGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgttg > 7:180592/1‑149 (MQ=255) cGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgttg > 7:175519/1‑149 (MQ=255) tCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgttg > 7:255872/1‑144 (MQ=255) tCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgttg < 8:255872/144‑1 (MQ=255) ggTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTg < 2:103393/148‑1 (MQ=255) ggTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGc > 7:241425/1‑149 (MQ=255) ggTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGc < 5:92905/149‑1 (MQ=255) ggTTATAGCTGCCAGGT‑GTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGc < 7:3467/148‑1 (MQ=255) ataGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCgg < 4:310176/148‑1 (MQ=255) ataGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCgg < 5:82300/148‑1 (MQ=255) ataGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCgg < 7:152225/148‑1 (MQ=255) taGCTGCCTGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGc < 5:283048/148‑1 (MQ=255) aGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑tttttttt > 1:348664/1‑118 (MQ=255) gCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCt > 7:302222/1‑149 (MQ=255) tGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGCGTTGTCAGTGCCgg < 6:339531/144‑1 (MQ=255) tGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGCGTTGTCAGTGCCgg > 5:339531/1‑144 (MQ=255) gCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTc < 2:224272/149‑1 (MQ=255) gCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCAACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGAGCCGGCCCTATc > 7:283318/1‑149 (MQ=255) ccAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcg > 1:339116/1‑149 (MQ=255) ccAGGTGGTTCGGGGTCTGTAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTGGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTc < 4:257493/148‑1 (MQ=255) cAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATgtgtgt < 8:44980/128‑1 (MQ=255) cAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATgtgtgt > 7:44980/1‑128 (MQ=255) aGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgcg < 8:180592/149‑1 (MQ=255) ggtggtTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg < 6:67958/149‑1 (MQ=255) ggtggtTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg < 5:237984/149‑1 (MQ=255) gtggtTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg < 2:271050/149‑1 (MQ=255) gtTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑Taa < 8:269647/149‑1 (MQ=255) gtgtGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAAcc < 2:339116/148‑1 (MQ=255) aTGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCTCTTCGCGGG‑TAAACCCGCTcc > 6:336474/1‑149 (MQ=255) aTGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTcc > 5:99505/1‑149 (MQ=255) tGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTcc > 2:261911/1‑148 (MQ=255) ggAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttttttttt < 7:336669/96‑1 (MQ=255) ggAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttttttttt > 8:336669/1‑96 (MQ=255) gAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTAc < 1:257280/149‑1 (MQ=255) aaGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCGccga > 2:284297/1‑145 (MQ=255) aaGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑GTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTTAAAccccgacga > 2:280072/1‑141 (MQ=255) gACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAg < 8:302222/148‑1 (MQ=255) cATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGAt > 8:305403/1‑149 (MQ=255) aTGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGAt > 1:142592/1‑148 (MQ=255) cTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCg < 4:150493/149‑1 (MQ=255) gt‑‑gtGAACCCGCCAGCGTTTCCGCGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTAATATGAATGTGTGTTGTAAGTGCCGGCCCTTTCGCGGG‑TTAACCCGCTACAAAAGGATTATAGCTg > 7:53132/1‑149 (MQ=38) t‑‑gtgAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGc < 1:184429/149‑1 (MQ=255) aaCCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtgt < 2:81966/90‑1 (MQ=255) cccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGt < 5:69065/149‑1 (MQ=255) ccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtgt < 6:173830/87‑1 (MQ=255) ccAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGa < 8:241425/149‑1 (MQ=255) aGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGc < 1:261911/149‑1 (MQ=255) cGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCgg < 5:336474/149‑1 (MQ=25) gTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGccc > 5:318927/1‑136 (MQ=255) gTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGccc < 6:318927/136‑1 (MQ=255) tttCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGt > 2:93741/1‑149 (MQ=255) ccACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCCGTAGGAGCGGGttt < 7:305403/148‑1 (MQ=255) ccACGCTGATTCGCTAGTACGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTTAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGttt < 7:288154/148‑1 (MQ=255) cACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTa < 6:99505/148‑1 (MQ=255) aCGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATAGCTGCCCCTGTAGGAGCGGGTTTTcc > 2:96784/1‑149 (MQ=255) gATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCcgcg > 2:248842/1‑148 (MQ=255) ttCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGACAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGaa < 1:112533/148‑1 (MQ=255) cGCTTTTACGCCAATCAAAAACCGGCAACCTGGGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGGCCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGTATTATCGCTGCCCCTGAAGGAGGGGGTTTACCCGCGAaga < 6:210980/148‑1 (MQ=37) gCTTGTACGCCAATGAAAAACCGGCACCCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAgg < 4:278940/149‑1 (MQ=38) gCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg < 6:132011/88‑1 (MQ=255) gCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg > 5:132011/1‑88 (MQ=255) gCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATAGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAgg > 3:278940/1‑149 (MQ=255) ggCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCCCTCCTACAGGATTAAAGGAGCCCCGGTAAGAGCGGGTTTACCCGCGAAGAGGCCAGcccc > 2:127916/1‑149 (MQ=38) cAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTAc < 1:44018/128‑1 (MQ=255) cAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTAc > 2:44018/1‑128 (MQ=255) aTGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCt < 6:369203/110‑1 (MQ=255) aTGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCt > 5:369203/1‑110 (MQ=255) aaaaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAg < 7:232357/110‑1 (MQ=255) aaaaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAg > 8:232357/1‑110 (MQ=255) aaaaaCGGGAACCCGAAGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑Taa < 7:9860/76‑1 (MQ=25) aaaaaCGGGAACCCGAAGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTa < 1:177478/109‑1 (MQ=37) aaaaaCGGGAACCCGAAGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTAGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTa > 2:177478/1‑109 (MQ=37) aaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTTCAGGATTTTAGGTGCCCGGGTAGGGGCGGGTTTACCCGCGGAGAGGCCAGCACCGGCAAcc > 6:331720/1‑146 (MQ=38) cGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGaaa < 5:274228/149‑1 (MQ=255) ggAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAAcc < 5:331720/149‑1 (MQ=255) | GACAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGT‑‑GTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG‑TAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACC > NC_002947/2456636‑2456924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |