| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,724 | A→G | 6.6% | V410V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,724 | 0 | A | G | 6.6% | 302.6 / 8.8 | 105 | V410V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (48/50); new base G (3/4); total (51/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
ACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAAC > NC_002947/195577‑195868 | aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑Taa > 7:288317/1‑149 (MQ=25)aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑Taa > 3:210724/1‑149 (MQ=40)aCTGACCCCGAATCCGACCCCGGATCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑Taa < 4:228103/149‑1 (MQ=255) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTCCCCAGACGCCGG‑TAAc < 3:245615/149‑1 (MQ=255) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TGAcc > 5:156491/1‑149 (MQ=2) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCg > 1:193040/1‑149 (MQ=38) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TGAcc < 5:151569/147‑1 (MQ=2) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TGACCGt > 6:12251/1‑149 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGt > 6:164383/1‑147 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGt < 5:164383/147‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGANCAACCCTGCCCAGACGCCGG‑TGACCGTGac < 1:33847/149‑2 (MQ=9) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGaa < 8:108780/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGaa > 3:101085/1‑149 (MQ=255) cGAATCCGACCCCGGCTCATACCACTATCAACGACTCGGTCGACACCACCACCTCTTCCCTGACTGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAAc < 7:31499/149‑1 (MQ=14) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCt < 4:225891/149‑1 (MQ=255) tCCGACCGCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGAGGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGt < 3:294328/149‑1 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACAACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCaa > 3:79304/1‑149 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGc > 3:280262/1‑149 (MQ=37) ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGcc < 2:193040/149‑1 (MQ=37) cAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCATGAACCTGTCCAACGGCCAAAc > 3:242430/1‑149 (MQ=255) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACAGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 2:297025/1‑149 (MQ=21) tCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 4:101085/149‑1 (MQ=39) cTCGGTCGACAGCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCTCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCATACGATTACCGGTGAAGCgg < 8:245358/149‑1 (MQ=14) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCg < 3:285379/107‑1 (MQ=25) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCg > 4:285379/1‑107 (MQ=25) gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 5:125669/148‑1 (MQ=39) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 4:147014/135‑1 (MQ=40) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 3:147014/1‑135 (MQ=40) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 4:157814/1‑149 (MQ=39) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGCCCCTGAGCAACCCTGCCCAGCCGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 5:67604/1‑149 (MQ=255) taccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGAGTAAAACACAgctc > 8:134929/2‑145 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGt < 4:199446/96‑1 (MQ=40) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TGACCGTGACCCTGTCCAACGGCCAAACGATTa < 7:238234/121‑1 (MQ=17) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TGACCGTGACCCTGTCCAACGGCCAAACGATTa > 8:238234/1‑121 (MQ=17) aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑a < 1:297025/149‑1 (MQ=39) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑At > 2:175347/1‑149 (MQ=39) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 6:93170/125‑1 (MQ=40) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 5:93170/1‑125 (MQ=40) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑Att > 6:344111/1‑149 (MQ=39) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 3:163155/112‑1 (MQ=255) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTAcc > 4:163155/1‑112 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTcc < 4:280262/148‑1 (MQ=39) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTc > 3:115984/1‑147 (MQ=39) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGGCG‑ATTTcc < 3:39030/148‑1 (MQ=255) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCa < 1:175347/148‑1 (MQ=39) gccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCgg < 4:66354/148‑1 (MQ=39) cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATATCCAGACCCCGGc > 3:288051/1‑148 (MQ=255) gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGcc > 2:14919/1‑148 (MQ=39) tCGTTCACCGAAGGCGTCTTTATCACTTACACCGTGACCCTTAGAAACCCTGCCCAGACGCCGT‑TAACCGTGAACCTGTCCAACTGCCAAACGATTACCGTAGAAGCGGGTAAAACCCAGGGCAGCGTCG‑AATTCCAGACCCCGGCCaa < 3:222485/149‑1 (MQ=14) tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCaa < 4:115984/149‑1 (MQ=39) ggTCACCGAAGGCGGCGTGATCACTTACACCTTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAAt < 7:134929/148‑1 (MQ=255) ggTCACCCAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATg < 4:201074/149‑1 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCCTGCCCAGACGCCGG‑TATCCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGa > 3:214248/1‑149 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTTACCCTTGACCATGTCAAACGGCAAAAGCTTTACGTTTGAAGGGGGTAAAA‑CCAAGGCCGCGGAGAATTTCCGGACCCCGGCCatt > 1:285877/1‑146 (MQ=2) tCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGAc < 4:225607/149‑1 (MQ=255) cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACg > 7:127859/1‑149 (MQ=39) aCCGAAGGCTTCGTGATCACTTACACCTTGACCCTGAGCAACCCTGACCAGACGCCGG‑TAACCTTTATCCTGTCGAACGGCCAAACGATTAGAGTTGTATCGGTTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGt < 4:79304/149‑1 (MQ=11) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGt > 5:242547/1‑149 (MQ=39) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTc > 1:81278/1‑148 (MQ=39) gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCATGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTa < 4:242430/149‑1 (MQ=255) ggcggcGTCATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTacaa < 7:176100/149‑1 (MQ=255) cgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTa < 6:103038/80‑1 (MQ=255) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 3:227321/1‑100 (MQ=255) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg < 4:227321/100‑1 (MQ=255) aCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGa < 8:127859/148‑1 (MQ=255) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCg > 4:320577/1‑149 (MQ=40) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCg > 3:307535/1‑149 (MQ=40) agaccgtgaccgtgAGCAACCCTGCCCAGAAGCCGG‑TAACCGTTAACCTGTCCAACGCCCAAACGATTACCGTTGAAGAGTGTAAAACCCAGGGCAGCGTCG‑ATATCCAGACGGCGGCCAATGACGTCTACAAGAACGGGTCGACCGt < 4:288051/146‑1 (MQ=14) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAccc > 5:326287/1‑90 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAccc < 6:326287/90‑1 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGt < 8:100456/127‑1 (MQ=38) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAg > 5:318793/1‑149 (MQ=39) ccGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCa > 1:77961/1‑93 (MQ=40) ccGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCa < 2:77961/93‑1 (MQ=40) cGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGCCCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCg > 3:211002/1‑149 (MQ=255) cGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCatcc > 5:308262/1‑146 (MQ=255) gTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGt < 3:157814/149‑1 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGACGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCAcc > 5:177452/1‑148 (MQ=255) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTc < 3:19544/118‑1 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTc > 4:19544/1‑118 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTc < 4:186245/145‑1 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTc > 3:186245/1‑145 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCa > 1:54165/1‑149 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTCGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCa > 4:34753/1‑149 (MQ=255) ccTGAGCAACCCTGCCCAGACGCCGG‑TAACAGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 2:298926/1‑69 (MQ=255) accaccccTGCCCAGACGCCGC‑TAACCGTGAACCTGTCCACCGGCCACACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACCTCTACAACAACGGCTCGACCGTCAGCGTCACCATCga < 4:214248/144‑1 (MQ=11) aGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATc < 2:81278/147‑1 (MQ=39) gCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCgag < 1:14919/149‑1 (MQ=39) cAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCga > 1:121786/1‑147 (MQ=39) cccTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 6:85880/72‑1 (MQ=40) cccTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa > 5:85880/1‑72 (MQ=40) cccTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAgcg > 3:344252/1‑149 (MQ=38) ccTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAgcgc < 6:242547/149‑1 (MQ=37) cccAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCt > 6:328299/1‑117 (MQ=38) cccAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCt < 5:328299/117‑1 (MQ=38) cccAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCa < 3:320577/147‑1 (MQ=37) cccAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACt > 5:259949/1‑149 (MQ=38) cAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCTGACCCCGGCAAATGAAGTCTAAAAAAAAGGCTCGACCGACAGCGTCACAATCGAGCGATCCACTgg > 5:114798/1‑149 (MQ=11) ccccGG‑TAACCCCGACCCTGCCCAACCCCCAAACGAATACCCTTGAAGCGTGTAAAACCCATCGCCGCGTCT‑CTTTCCAGACCCCCTCCAATGACCTCTACACCAACCCCGCCCCCGTCACCCTCACCATCGAGAGCGCCACTggcggc < 2:59016/147‑1 (MQ=2) cGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAAc < 6:259949/149‑1 (MQ=39) | ACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGG‑TAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCG‑ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAAC > NC_002947/195577‑195868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |