Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,532,024 T→C 7.1% intergenic (+81/‑205) PP_2222 → / → PP_2223 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,532,0240TC 7.1% 157.1 / 2.1 56intergenic (+81/‑205)PP_2222/PP_2223hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (26/26);  new base C (2/2);  total (28/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTGCA  >  NC_002947/2531877‑2532166
                                                                                                                                                   |                                                                                                                                              
gcgcgAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCCGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCtt                                                                                                                                               >  5:185081/1‑149 (MQ=255)
  gcgAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGt                                                                                                                                             <  6:297480/149‑1 (MQ=255)
          gcgcTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAg                                                                                                                                      >  2:233410/1‑148 (MQ=255)
             cTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAgg                                                                                                                                  <  1:24709/149‑1 (MQ=255)
                  gTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCAc                                                                                                                             >  8:274322/1‑149 (MQ=255)
                   tGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACg                                                                                                                            >  7:290777/1‑149 (MQ=255)
                      cAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACg                                                                                                                            >  4:139326/1‑146 (MQ=255)
                      cAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACg                                                                                                                            <  3:139326/146‑1 (MQ=255)
                      cAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCa                                                                                                                         >  2:196281/1‑149 (MQ=255)
                          cTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTgg                                                                                                                     <  6:266492/149‑1 (MQ=255)
                              cTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 <  1:233410/149‑1 (MQ=255)
                                 gcagcagcaGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 >  8:49193/1‑146 (MQ=255)
                                 gcagcagcaGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 <  7:49193/146‑1 (MQ=255)
                                   agcagcagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCa                                                                                                                                    <  6:195783/125‑1 (MQ=255)
                                   agcagcagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCa                                                                                                                                    >  5:195783/1‑125 (MQ=255)
                                   agcagcagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGtttt                                                                                                            <  7:50184/149‑1 (MQ=255)
                                        cagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGc                                                                                                       <  6:185081/149‑1 (MQ=255)
                                             gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 <  4:30924/134‑1 (MQ=255)
                                             gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 >  3:26279/1‑134 (MQ=255)
                                             gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 <  4:26279/134‑1 (MQ=255)
                                             gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 >  3:30924/1‑134 (MQ=255)
                                                 aaaGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTgg                                                                                                        <  1:126404/139‑1 (MQ=255)
                                                 aaaGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTgg                                                                                                        >  2:126404/1‑139 (MQ=255)
                                                   aGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 <  1:217789/128‑1 (MQ=255)
                                                   aGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc                                                                                                                 >  2:217789/1‑128 (MQ=255)
                                                   aGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCa                                                                                            <  3:81113/149‑1 (MQ=255)
                                                           ctgCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCAc                                                                                    >  8:276740/1‑149 (MQ=255)
                                                               cTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTGTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCtt                                                                                >  2:239741/1‑149 (MQ=255)
                                                                       gTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGcc                                                                        >  3:51192/1‑149 (MQ=255)
                                                                          tATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCgg                                                                      <  4:51192/148‑1 (MQ=255)
                                                                            ttGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGa                                                                    <  4:143801/148‑1 (MQ=255)
                                                                            ttGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATAGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGa                                                                    <  2:223281/148‑1 (MQ=255)
                                                                               ccTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATg                                                                 <  7:274322/148‑1 (MQ=255)
                                                                                 tctcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGa                                                                                                 >  3:242658/1‑114 (MQ=255)
                                                                                 tctcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGa                                                                                                 <  4:242658/114‑1 (MQ=255)
                                                                                 tctcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGc                                                              >  4:287628/1‑149 (MQ=255)
                                                                                   tcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGc                                                              <  8:290777/147‑1 (MQ=255)
                                                                                    cGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCa                                                            >  1:161323/1‑148 (MQ=255)
                                                                                     gACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCaaa                                                          >  3:72894/1‑149 (MQ=255)
                                                                                             tCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTc                                                   <  3:287628/148‑1 (MQ=255)
                                                                                                    tttCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGaa                                            <  7:221305/148‑1 (MQ=255)
                                                                                                      tCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAgg                                          <  7:276740/148‑1 (MQ=255)
                                                                                                             tatTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTg                                  <  1:196281/149‑1 (MQ=255)
                                                                                                               tttGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTgg                                 >  2:330337/1‑148 (MQ=255)
                                                                                                                      tACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGa                                       <  2:11173/135‑1 (MQ=255)
                                                                                                                      tACAGTAATGCGCACATGGATGCCAGAGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGa                                       >  1:11173/1‑135 (MQ=255)
                                                                                                                        cAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTgg                                 <  7:385/139‑1 (MQ=255)
                                                                                                                        cAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTgg                                 >  8:385/1‑139 (MQ=255)
                                                                                                                        cAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCagag                       >  3:325482/1‑149 (MQ=255)
                                                                                                                         aGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGaa                                            >  6:217278/1‑127 (MQ=255)
                                                                                                                         aGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGaa                                            <  5:217278/127‑1 (MQ=255)
                                                                                                                             aTGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTaaa                   <  4:72894/148‑1 (MQ=255)
                                                                                                                               gcgcACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGAt                >  8:218991/1‑149 (MQ=255)
                                                                                                                                   acaTGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCt            >  7:186391/1‑149 (MQ=255)
                                                                                                                                   acaTGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCt            >  4:105533/1‑149 (MQ=255)
                                                                                                                                           gCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTg    >  1:68278/1‑149 (MQ=255)
                                                                                                                                             cAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCGTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTGCa  >  8:320430/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
GCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTGCA  >  NC_002947/2531877‑2532166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: