Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,532,024 | T→C | 7.1% | intergenic (+81/‑205) | PP_2222 → / → PP_2223 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,532,024 | 0 | T | C | 7.1% | 157.1 / 2.1 | 56 | intergenic (+81/‑205) | PP_2222/PP_2223 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (26/26); new base C (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTGCA > NC_002947/2531877‑2532166 | gcgcgAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCCGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCtt > 5:185081/1‑149 (MQ=255) gcgAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGt < 6:297480/149‑1 (MQ=255) gcgcTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAg > 2:233410/1‑148 (MQ=255) cTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAgg < 1:24709/149‑1 (MQ=255) gTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCAc > 8:274322/1‑149 (MQ=255) tGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACg > 7:290777/1‑149 (MQ=255) cAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACg > 4:139326/1‑146 (MQ=255) cAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACg < 3:139326/146‑1 (MQ=255) cAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCa > 2:196281/1‑149 (MQ=255) cTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTgg < 6:266492/149‑1 (MQ=255) cTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc < 1:233410/149‑1 (MQ=255) gcagcagcaGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc > 8:49193/1‑146 (MQ=255) gcagcagcaGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc < 7:49193/146‑1 (MQ=255) agcagcagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCa < 6:195783/125‑1 (MQ=255) agcagcagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCa > 5:195783/1‑125 (MQ=255) agcagcagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGtttt < 7:50184/149‑1 (MQ=255) cagcTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGc < 6:185081/149‑1 (MQ=255) gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc < 4:30924/134‑1 (MQ=255) gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc > 3:26279/1‑134 (MQ=255) gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc < 4:26279/134‑1 (MQ=255) gaagaaAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCCTGTCTTCTAGCAGGCTCACGCCATTGGTTGc > 3:30924/1‑134 (MQ=255) aaaGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTgg < 1:126404/139‑1 (MQ=255) aaaGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTgg > 2:126404/1‑139 (MQ=255) aGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc < 1:217789/128‑1 (MQ=255) aGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGc > 2:217789/1‑128 (MQ=255) aGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCa < 3:81113/149‑1 (MQ=255) ctgCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCAc > 8:276740/1‑149 (MQ=255) cTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTGTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCtt > 2:239741/1‑149 (MQ=255) gTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGcc > 3:51192/1‑149 (MQ=255) tATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCgg < 4:51192/148‑1 (MQ=255) ttGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGa < 4:143801/148‑1 (MQ=255) ttGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATAGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGa < 2:223281/148‑1 (MQ=255) ccTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATg < 7:274322/148‑1 (MQ=255) tctcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGa > 3:242658/1‑114 (MQ=255) tctcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGa < 4:242658/114‑1 (MQ=255) tctcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGc > 4:287628/1‑149 (MQ=255) tcGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGc < 8:290777/147‑1 (MQ=255) cGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCa > 1:161323/1‑148 (MQ=255) gACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCaaa > 3:72894/1‑149 (MQ=255) tCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTc < 3:287628/148‑1 (MQ=255) tttCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGaa < 7:221305/148‑1 (MQ=255) tCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAgg < 7:276740/148‑1 (MQ=255) tatTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTg < 1:196281/149‑1 (MQ=255) tttGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTgg > 2:330337/1‑148 (MQ=255) tACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGa < 2:11173/135‑1 (MQ=255) tACAGTAATGCGCACATGGATGCCAGAGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGa > 1:11173/1‑135 (MQ=255) cAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTgg < 7:385/139‑1 (MQ=255) cAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTgg > 8:385/1‑139 (MQ=255) cAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCagag > 3:325482/1‑149 (MQ=255) aGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGaa > 6:217278/1‑127 (MQ=255) aGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGaa < 5:217278/127‑1 (MQ=255) aTGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTaaa < 4:72894/148‑1 (MQ=255) gcgcACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGAt > 8:218991/1‑149 (MQ=255) acaTGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCt > 7:186391/1‑149 (MQ=255) acaTGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCt > 4:105533/1‑149 (MQ=255) gCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTg > 1:68278/1‑149 (MQ=255) cAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCGTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTGCa > 8:320430/1‑149 (MQ=255) | GCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCCATTGGTTGCGTTTTCTGGCGAGTGATTTCAGGCATCACGCTTCCCAAGCCGGGAATGAGCCAAACGCCTTCGGTTGAAGGCGATTCTGGCAAACCAGAGTAAAGATTCCTGCGCGCTGCA > NC_002947/2531877‑2532166 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |