Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,557,442 | T→A | 7.0% | intergenic (‑132/‑299) | PP_2241 ← / → fepA | MFS transporter/ferric enterobactin transport system outer membrane subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,557,442 | 0 | T | A | 7.0% | 162.6 / 2.8 | 57 | intergenic (‑132/‑299) | PP_2241/fepA | MFS transporter/ferric enterobactin transport system outer membrane subunit |
Reads supporting (aligned to +/- strand): ref base T (26/27); new base A (2/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 |
TTGTCATCGCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATG > NC_002947/2557294‑2557588 | ttgtCATCGCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGt < 4:136066/149‑1 (MQ=255) gtCATCGCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGt > 7:43009/1‑147 (MQ=255) aTCGCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCa > 1:133820/1‑146 (MQ=255) tCGCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCagaga < 4:206607/149‑1 (MQ=255) gCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAgt < 3:233686/149‑1 (MQ=255) cctcggaTCTGGTCTCTCCGCAGAGTTGTACGTCGAAACTGTAGATGCCTGCACTCAGGATGCAAACTGGATAGGTGGATAGCTGCAACAGCCTGTGGTGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAgt < 3:209202/142‑1 (MQ=255) cGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCt < 2:13164/149‑1 (MQ=255) gTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGt > 1:271840/1‑149 (MQ=255) gTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAAc < 8:43009/149‑1 (MQ=255) gTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTc > 6:8592/1‑148 (MQ=255) cTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAg < 6:221287/149‑1 (MQ=255) cTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAg < 2:271840/149‑1 (MQ=255) cTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAg < 2:133820/149‑1 (MQ=255) tGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGACAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAgg > 5:23849/1‑149 (MQ=255) tGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGACAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAgg > 5:18593/1‑149 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCgg > 2:91750/1‑113 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCgg < 1:91750/113‑1 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTAt < 5:8592/149‑1 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTAt > 2:7787/1‑149 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGACAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTAt < 6:18593/149‑1 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGACAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTAt < 6:23849/149‑1 (MQ=255) ccggATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATc < 8:269509/147‑1 (MQ=255) caGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATc < 2:161324/149‑1 (MQ=255) cAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGaa > 8:75341/1‑134 (MQ=255) cAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGaa < 7:75341/134‑1 (MQ=255) aaCTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAgg > 3:6/1‑149 (MQ=255) gATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAggggg > 8:60567/1‑147 (MQ=255) aTAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAg > 5:82899/1‑149 (MQ=255) aGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTc > 3:39885/1‑149 (MQ=255) gTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCg > 1:233181/1‑149 (MQ=255) gATAGCAGCAACACCCCGTGCAGAAGACGAAACAGTCCATAAATGCAGGGGTGGTTATTCCGTCACAGCGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGTCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCg < 2:114289/149‑1 (MQ=38) gcagcaACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGc > 4:22581/1‑149 (MQ=255) agcaACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCt > 6:234734/1‑148 (MQ=255) caACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTcac < 6:80546/149‑1 (MQ=255) caACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTca > 5:80546/1‑148 (MQ=255) aCAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACa > 6:328436/1‑97 (MQ=255) cAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAg < 1:7787/149‑1 (MQ=255) atgtctaaaCTTTCAATAAATGCAGGGGTGGTTATTCCGTCAGAGATTGTCTTCGGCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCTCTGTTGc < 6:82899/143‑1 (MQ=38) aCGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCa > 6:167517/1‑147 (MQ=255) aaaCTTTCCATAAATGCAGGGGTGGTTATTCAGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGATCCTAAAGGCGACCACGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGATGTGGCAAAGa > 5:34583/1‑148 (MQ=255) aCTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCa < 2:233181/149‑1 (MQ=255) tttCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACg > 1:218589/1‑149 (MQ=255) ttCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACgg > 7:128741/1‑149 (MQ=255) ccATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACg < 4:7868/146‑1 (MQ=255) ccATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACg > 3:7868/1‑146 (MQ=255) cATAAATGCAGTGGGGGGTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTc < 4:6/149‑1 (MQ=255) aTAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCa < 2:218589/149‑1 (MQ=255) aTAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCa < 7:60567/149‑1 (MQ=255) tAAATGCAGGGGTGGATATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAg < 1:140512/149‑1 (MQ=255) ggtggtTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAg < 8:128741/149‑1 (MQ=255) tggtTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTACGCTGAGGCAAAGATCACGGTTCAGCAAAGTTCAGt > 4:144835/1‑148 (MQ=255) gtTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGttgggggt > 1:126932/1‑142 (MQ=255) gtTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGt < 2:126932/146‑1 (MQ=255) tATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACg < 6:195599/127‑1 (MQ=255) tATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACg > 5:195599/1‑127 (MQ=255) tCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTaacaaaca > 2:157985/1‑149 (MQ=255) gTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAggg < 3:219535/76‑1 (MQ=255) gTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAggg > 4:219535/1‑76 (MQ=255) gTCAGAGAGTGTCTTAGCCCGTTTCCCGGGTAAACCCGCTACTACAGGCGACCGCGAAGGCTTATCAAATTTAGCGGGAAGTCCGGCGTGGCTCACAAGCTTAGCTGTGGCAAAGATCACGGTTCAGCAAAGATCAGTAACAAACATg > 2:273623/1‑148 (MQ=255) | TTGTCATCGCCACGCATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATG > NC_002947/2557294‑2557588 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |