Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,659,389 A→G 6.3% I316T (ATC→ACC)  PP_2331 ← membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,659,3890AG 6.3% 181.4 / 2.1 63I316T (ATC→ACC) PP_2331membrane protein
Reads supporting (aligned to +/- strand):  ref base A (32/27);  new base G (2/2);  total (34/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACCGTGAACAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACGGTGGCCTTCTT  >  NC_002947/2659242‑2659534
                                                                                                                                                   |                                                                                                                                                 
aCCGTGAACAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGa                                                                                                                                                   >  4:87312/1‑148 (MQ=255)
aCCGTGAACAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGa                                                                                                                                                   <  7:196544/148‑1 (MQ=255)
aCCGTGAACAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGAt                                                                                                                                                  >  2:186674/1‑149 (MQ=255)
aCCGTGAACAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGAt                                                                                                                                                  >  6:148386/1‑149 (MQ=255)
       aCAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAg                                                                                                                                           >  4:6179/1‑149 (MQ=255)
       aCAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAg                                                                                                                                           <  3:6179/149‑1 (MQ=255)
            aTGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTg                                                                                                                                      <  6:246597/149‑1 (MQ=255)
                tACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTgg                                                                                                                                  >  3:46360/1‑149 (MQ=255)
                  gcGAAACCCAGCTGGGCTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGt                                                                                                                                >  3:264561/2‑149 (MQ=255)
                   cGAAGCCCAGCTGGGTTTCGCGGAACGCCCGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATAAAGGTTTGCTGGGtt                                                                                                                               >  5:76927/1‑149 (MQ=255)
                          cAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCCCCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTg                                                                                                                        >  4:339593/1‑149 (MQ=255)
                               gggTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAgg                                                                                                                   >  6:277022/1‑149 (MQ=255)
                                      gcgGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGACAGGCCGTACa                                                                                                            <  3:87312/149‑1 (MQ=255)
                                      gcgGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCCGGGTTTGCAGTGGCAGGCCGTACa                                                                                                            <  5:148386/149‑1 (MQ=255)
                                          aaCGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGa                                                                                                        <  4:46360/149‑1 (MQ=255)
                                              ccAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTAt                                                                                                    >  5:209640/1‑149 (MQ=255)
                                               cAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTAtt                                                                                                   >  4:302613/1‑149 (MQ=255)
                                                       tCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGAACATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAg                                                                                           >  1:317420/1‑149 (MQ=255)
                                                          gCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCg                                                                                        >  7:62628/1‑149 (MQ=255)
                                                           cACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCgg                                                                                       <  3:302613/149‑1 (MQ=255)
                                                           cACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCgg                                                                                       >  4:132206/1‑149 (MQ=255)
                                                              cGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGt                                                                                    <  1:149476/149‑1 (MQ=255)
                                                                gggTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATAAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGgcggcg                                                                                  <  6:76927/149‑1 (MQ=255)
                                                                 ggTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCgg                                                                                 >  3:164328/1‑149 (MQ=255)
                                                                  gTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGgt                                                                                <  3:339593/149‑1 (MQ=255)
                                                                          gCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATTGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGt                                                                                                                         <  1:35771/100‑1 (MQ=255)
                                                                          gCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATTGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGt                                                                                                                         >  2:35771/1‑100 (MQ=255)
                                                                          gCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGtt                                                                                                                               <  1:21514/94‑1 (MQ=255)
                                                                          gCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGtt                                                                                                                               >  2:21514/1‑94 (MQ=255)
                                                                          gCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCg                                                                                                 <  3:143088/124‑1 (MQ=255)
                                                                          gCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCg                                                                                                 >  4:143088/1‑124 (MQ=255)
                                                                            ccAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCGCCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCtcgtcg                                                                      >  8:211410/1‑149 (MQ=255)
                                                                            ccAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGc                                                                                                                                     >  5:353838/1‑86 (MQ=255)
                                                                            ccAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGc                                                                                                                                     <  6:353838/86‑1 (MQ=255)
                                                                                  ccTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGc                                                                <  5:277022/149‑1 (MQ=255)
                                                                                  ccTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGc                                                                >  2:189790/1‑149 (MQ=255)
                                                                                      gATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGAGTCGGTGTTCTCGTCGGGCCGCTTgg                                                            >  8:144312/1‑149 (MQ=255)
                                                                                         gCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGGCCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGc                                                           >  6:134283/1‑147 (MQ=255)
                                                                                              tCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAg                                                                                               >  3:339001/1‑106 (MQ=255)
                                                                                              tCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAg                                                                                               <  4:339001/106‑1 (MQ=255)
                                                                                                 ggTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATg                                                 <  4:264561/149‑1 (MQ=255)
                                                                                                  gTTGCGCAGCACCATGATCACCAGCACGCCGATCGGGATCATGAACATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCg                                                     <  7:77435/144‑1 (MQ=255)
                                                                                                  gTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGGTCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATgg                                                >  3:309401/1‑149 (MQ=255)
                                                                                                  gTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGGTCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATgg                                                >  3:304422/1‑149 (MQ=255)
                                                                                                  gTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCg                                                     >  8:77435/1‑144 (MQ=255)
                                                                                                  gTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATgg                                                >  5:46964/1‑149 (MQ=255)
                                                                                                     gcgcAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGt                                             >  5:55932/1‑149 (MQ=255)
                                                                                                       gcagcaCCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGtt                                            >  8:152309/1‑148 (MQ=255)
                                                                                                       gcagcaCCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGtt                                            >  8:16684/1‑148 (MQ=255)
                                                                                                        cagcaCCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCgg                                                                                 <  8:330243/110‑1 (MQ=255)
                                                                                                        cagcaCCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCgg                                                                                 >  7:330243/1‑110 (MQ=255)
                                                                                                            aCCAGGATCACCAGCTCGCAGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGGGAGTATTCGAGGATGTCGGGGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCAtct                                       <  8:1010/148‑1 (MQ=255)
                                                                                                              cAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGc                                    <  6:55932/149‑1 (MQ=255)
                                                                                                                ggATCACCAGCTCGCCGATGTGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGGCTGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCtg                                  <  2:317420/149‑1 (MQ=255)
                                                                                                                     aCCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCtgttgt                              <  6:209640/148‑1 (MQ=255)
                                                                                                                             gCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGa                     <  7:211410/149‑1 (MQ=255)
                                                                                                                               cGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAg                   <  4:164328/149‑1 (MQ=255)
                                                                                                                                     ggATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTc                                                                   >  6:287961/1‑95 (MQ=255)
                                                                                                                                     ggATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTc                                                                   <  5:287961/95‑1 (MQ=255)
                                                                                                                                     ggATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACg             <  6:46964/149‑1 (MQ=255)
                                                                                                                                        tCATGACCATGGTCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACGGTg          <  4:304422/149‑1 (MQ=255)
                                                                                                                                         cATGACCATGGTCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACGGTg          <  4:309401/148‑1 (MQ=255)
                                                                                                                                             aCCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTGGTTCATGCTGAAGGTGACGGTgtcggg     >  8:77375/1‑144 (MQ=255)
                                                                                                                                               cATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACGGTGGCcttct   >  6:177831/1‑149 (MQ=255)
                                                                                                                                                aTGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACGGTGGCcttctt  <  3:132206/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
ACCGTGAACAGCATGATACCGAAGCCCAGCTGGGTTTCGCGGAACGCCAGGGCGATCAGCACCGGGGTGAATGTGCCCAGGGCCTGGATGCCGATCAGGTTGCGCAGCACCAGGATCACCAGCACGCCGATCGGGATCATGACCATGATCATGAAGGTTTGCTGGGTTTGCAGTGGCAGGCCGTACAGCGAGTATTCGAGGAAGTCGGCGTCGGTGTTCTCGTCGGTCAGCTTGGCCAGGCGGATGGCGTTCATCTCGCTGTTGTTCATGCTGAAGGTGACGGTGGCCTTCTT  >  NC_002947/2659242‑2659534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: