| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,808,544 | A→C | 9.8% | noncoding (416/434 nt) | PP_mr35 ← | cspA regulatory region |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,808,544 | 0 | A | C | 9.8% | 165.2 / 8.5 | 60 | noncoding (416/434 nt) | PP_mr35 | cspA regulatory region |
| Reads supporting (aligned to +/- strand): ref base A (25/29); new base C (3/3); total (28/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
GCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGT > NC_002947/2808399‑2808692 | gcAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACaa < 6:279079/149‑1 (MQ=255) aaaaTGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAgg > 3:142416/1‑149 (MQ=255) gAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGtt > 8:67943/1‑149 (MQ=255) aaaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGACCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGatt > 7:84227/1‑149 (MQ=255) aaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGttttt < 7:67943/149‑1 (MQ=255) gcgcGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCCTTGTGGCGGGTTTTTTTatgg < 3:343570/149‑4 (MQ=39) cgcgGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCCTTGTGGCGGGTTTTTTTatgg < 6:139416/148‑4 (MQ=39) gCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTTGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCg < 6:364666/148‑1 (MQ=255) gCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCg < 5:151786/148‑1 (MQ=255) cTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCggg > 4:209712/1‑128 (MQ=255) cTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCggg < 3:209712/128‑1 (MQ=255) ggTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGa < 3:294157/149‑1 (MQ=255) ttCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCCCAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAAc > 3:233525/1‑149 (MQ=255) cgcgAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCtgtg > 4:319613/1‑148 (MQ=255) cacGGGCTTTGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTg > 5:199601/1‑149 (MQ=255) cGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCtgt > 2:228165/1‑139 (MQ=255) cGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCtgt < 1:228165/139‑1 (MQ=255) gCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGc < 6:92944/149‑1 (MQ=255) cccGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCt < 3:319613/149‑1 (MQ=255) gCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGtttttt > 7:267848/1‑92 (MQ=255) gCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGtttttt < 8:267848/92‑1 (MQ=255) ccATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGCACGAACCTGTGCAGCCTGCATGCCCTTCTGGcc < 1:224292/148‑1 (MQ=255) acacTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTAATCCGG‑ACGAACCTTTGCAGCCTGAATGCCCTTCTGGCCGCGCTCgg > 8:214174/4‑149 (MQ=255) cccTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGc < 1:11742/149‑1 (MQ=255) cAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGcgacg > 4:158561/1‑148 (MQ=255) aGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGcgacg > 7:118471/1‑147 (MQ=255) tCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAg > 5:49111/1‑148 (MQ=255) ggTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGaa < 6:199601/149‑1 (MQ=255) gTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGaaa < 1:206046/149‑1 (MQ=255) gTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGaaa < 3:253298/149‑1 (MQ=255) gTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGaa > 2:336586/1‑148 (MQ=255) gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAATGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCa < 7:150834/104‑1 (MQ=255) gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCa > 8:150834/1‑104 (MQ=255) aGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTg > 5:141442/1‑149 (MQ=255) aGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTg > 3:174028/1‑149 (MQ=255) ggCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑AAGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTgg > 1:265499/1‑149 (MQ=255) gCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCt < 6:307181/125‑1 (MQ=255) gCAATCCCGCCACTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCt > 5:307181/1‑125 (MQ=255) aTCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCctt < 4:233525/149‑1 (MQ=255) ccccTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa < 8:118471/149‑1 (MQ=255) ccTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAgg > 8:21015/1‑149 (MQ=255) ccTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAgg < 4:174028/149‑1 (MQ=255) ccTTCAGATGATGCATCACCCAT‑AAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGc > 5:38910/1‑149 (MQ=255) cTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCctt < 5:130713/140‑1 (MQ=255) cTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCctt > 6:130713/1‑140 (MQ=255) tCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAg < 2:51128/87‑1 (MQ=255) tCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAg > 1:51128/1‑87 (MQ=255) aGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCtt < 6:141442/149‑1 (MQ=255) atgatgCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGa < 7:214174/149‑1 (MQ=255) cATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGt < 3:158561/149‑1 (MQ=255) aCCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGt > 3:23193/1‑145 (MQ=255) ccATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGAtt > 5:130415/1‑149 (MQ=255) aaaaaaaCCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa < 3:74660/124‑1 (MQ=39) aaaaaaaCCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa > 4:74660/1‑124 (MQ=39) aaaaaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGAt < 7:21015/148‑1 (MQ=255) aaaaaaACCGCCAGAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑TCTAACCTGTGCAGCCTTCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGATCTTGAAGCCGTCAGATTGGAt < 8:84227/148‑1 (MQ=255) aaaaaCCCGCCCTGGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATgg > 5:212506/1‑149 (MQ=39) cccGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGACCCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCGCTTGAAGCCGTCAGATTCGATgg < 8:318811/144‑1 (MQ=255) cccGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATgg > 7:318811/1‑144 (MQ=255) cGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGaa < 1:336586/149‑1 (MQ=255) acaAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAgtgt < 6:38910/149‑1 (MQ=255) | GCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGG‑ACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGT > NC_002947/2808399‑2808692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |