Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,809,757 | C→G | 7.4% | A55G (GCC→GGC) | thrS → | threonine‑‑tRNA ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,809,757 | 0 | C | G | 7.4% | 165.5 / 4.8 | 54 | A55G (GCC→GGC) | thrS | threonine‑‑tRNA ligase |
Reads supporting (aligned to +/- strand): ref base C (23/27); new base G (2/2); total (25/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
TTCCCGATGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGCCCGGTCATTGACGAAGGCTTCTATTAC > NC_002947/2809610‑2809905 | ttCCCGATGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGc > 6:276403/1‑148 (MQ=255) ttCCCGATGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGc > 4:57528/1‑148 (MQ=255) cccGATGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGc < 5:276403/146‑1 (MQ=255) ccGATGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCAcc > 8:171576/1‑149 (MQ=255) aTGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTg < 3:71556/149‑1 (MQ=255) aGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGat < 1:335568/149‑1 (MQ=255) aGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGat < 2:212776/149‑1 (MQ=255) gTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGatc < 3:57528/149‑1 (MQ=255) aCGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGAtcatca > 2:206373/1‑149 (MQ=255) gttcgttcGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGGCACCCTGCAGATCATCAcc > 7:171414/1‑149 (MQ=255) gttcgttcGATCACGACGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGGCACCCTGCAGATCATCAcc > 3:173726/1‑149 (MQ=255) ttcgttcgATCACACCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCAccc < 1:65820/149‑1 (MQ=255) aTCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGatcat > 1:222682/1‑136 (MQ=255) aTCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGatcat < 2:222682/136‑1 (MQ=255) aTCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGAt > 1:154016/1‑149 (MQ=255) aTCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGAt > 1:203016/1‑149 (MQ=255) aCGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGaa < 7:171576/149‑1 (MQ=255) cGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCATCAACGACGGCACCATGCAGATCATCACCCCTAAAGATGAAGAGGGACTg < 4:173726/148‑1 (MQ=255) cGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGGCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTg < 8:171414/148‑1 (MQ=255) aGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTg > 1:214702/1‑145 (MQ=255) gCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTg > 8:150125/1‑144 (MQ=255) gCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTg > 6:48213/1‑144 (MQ=255) ccGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGAt > 5:282511/1‑148 (MQ=255) cGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTg > 3:285981/1‑142 (MQ=255) cGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTg < 4:285981/142‑1 (MQ=255) aGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTc < 6:282511/149‑1 (MQ=255) aGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTc < 5:48213/149‑1 (MQ=255) ccGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCAc < 1:206373/149‑1 (MQ=255) cGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACt < 2:154016/149‑1 (MQ=255) gCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGc > 4:63096/1‑100 (MQ=255) gCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGc < 3:63096/100‑1 (MQ=255) ttCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAag < 7:117508/122‑1 (MQ=255) ttCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAag > 8:117508/1‑122 (MQ=255) aTCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTgcgc > 6:352436/1‑149 (MQ=255) tCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTgc < 7:179833/146‑1 (MQ=255) tCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTgc > 8:179833/1‑146 (MQ=255) tCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGcc < 8:302350/149‑1 (MQ=255) cGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGcc > 2:149329/1‑148 (MQ=255) gcgcTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCAc < 1:149329/149‑1 (MQ=255) gcgcTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCAc < 7:150125/149‑1 (MQ=255) cctggccAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACttggttg < 2:214702/149‑1 (MQ=255) ctggccAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACttggttgg > 4:158888/1‑149 (MQ=255) cAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGTTCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCaag > 6:9911/1‑147 (MQ=255) cACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGGCCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTg > 1:307760/1‑148 (MQ=255) cGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCGCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGt < 2:203016/149‑1 (MQ=255) cGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTg > 6:60515/1‑148 (MQ=255) gCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGcc > 7:299789/1‑146 (MQ=255) cAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACt > 7:148614/1‑107 (MQ=255) cAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACt < 8:148614/107‑1 (MQ=255) aGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATg < 8:299789/149‑1 (MQ=255) gCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATGACCCCTAATGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATgg < 5:364179/149‑1 (MQ=255) gTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGAt < 6:338410/149‑1 (MQ=255) aTGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCACCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGc > 2:111890/1‑149 (MQ=255) ccTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGCCCGGTCATTg < 3:158888/149‑1 (MQ=255) gCAACGACGCCACCCTGCAGTTCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGCCCGGTCATTGACGAAggt < 5:9911/149‑2 (MQ=255) aaCGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAag < 6:46565/96‑1 (MQ=255) aaCGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAag > 5:46565/1‑96 (MQ=255) ccACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGCCCGGTCATTGACGAAGGCTTCTATTAc < 5:352436/149‑1 (MQ=255) ccACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGCCCGGTCATTGACGAAGGCTTCTATTAc > 2:169802/1‑149 (MQ=255) | TTCCCGATGGCAGTCAACGTTCGTTCGATCACGCCGTATCCGTAGCCGAAGTAGCCGCTTCCATCGGCGCTGGCCTGGCCAAGGCCACCGTTGCCGGCAAGGTCGACGGCAAGCTGGTCGATGCGTGTGACCTGATCAGCAACGACGCCACCCTGCAGATCATCACCCCTAAAGATGAAGAGGGACTGGAGATCATTCGTCACTCGTGCGCCCACTTGGTTGGCCACGCCGTGAAGCAGCTGTACCCGACCGCCAAGATGGTGATCGGCCCGGTCATTGACGAAGGCTTCTATTAC > NC_002947/2809610‑2809905 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |