Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,829,821 | G→C | 8.2% | G142A (GGC→GCC) | PP_2482 → | molybdenum cofactor biosynthesis protein A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,829,821 | 0 | G | C | 8.2% | 180.1 / 4.9 | 60 | G142A (GGC→GCC) | PP_2482 | molybdenum cofactor biosynthesis protein A |
Reads supporting (aligned to +/- strand): ref base G (30/24); new base C (2/3); total (32/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACCACCAATGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATGCGCATGG > NC_002947/2829676‑2829967 | accaccAATGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCAt < 6:163931/149‑1 (MQ=255) ccaccaATGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGAGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCAtt < 7:270275/149‑1 (MQ=255) ccaATGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAg > 3:189374/1‑149 (MQ=255) aaTGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAg > 7:131745/1‑147 (MQ=255) aTGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAATGCCGTTGAGCac < 5:106086/149‑2 (MQ=255) tGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATCCGCTCGACCCGCGGGCCTTCCTCACGATCGCCAAGGTGGGCGACCTGCAGACTGTTCTCAATGCCGTTTAGCacc < 2:93147/149‑3 (MQ=255) gCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGa > 8:49660/1‑142 (MQ=255) gCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGa < 7:49660/142‑1 (MQ=255) gCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGgcg > 3:24114/1‑149 (MQ=255) ggCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGAGGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCAt > 2:197810/1‑149 (MQ=255) aaaCTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAg < 5:6946/149‑1 (MQ=255) aaaCTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAg < 4:189374/149‑1 (MQ=255) cTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCAt > 2:163056/1‑149 (MQ=255) ccGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGCTACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATc > 6:106427/1‑147 (MQ=255) ccGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATTCGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCaa < 5:106427/149‑1 (MQ=255) gCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACa > 3:40259/1‑149 (MQ=255) ccGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCg < 4:24114/149‑1 (MQ=255) tCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGt < 5:165813/149‑1 (MQ=255) ccAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTg > 8:1788/1‑149 (MQ=255) aGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTgg > 1:180396/1‑148 (MQ=255) gCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTgg > 6:27015/1‑147 (MQ=255) tCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAAc > 3:277141/1‑149 (MQ=255) tCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATc > 6:47857/1‑148 (MQ=255) cccTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATc > 2:324100/1‑147 (MQ=255) ccTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAg < 7:1788/149‑1 (MQ=255) cTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGt > 7:283924/1‑149 (MQ=255) tCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGtt > 4:172931/1‑149 (MQ=255) gATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGtttt < 2:180396/149‑1 (MQ=255) taggCTCGACCCGAGTGCCTTCCGCACGATCGGCTAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGc < 4:277141/146‑1 (MQ=255) tGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCt < 4:40259/149‑1 (MQ=255) ccTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGc < 1:163056/149‑1 (MQ=255) ttCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGtt > 6:249784/1‑126 (MQ=255) ttCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGtt < 5:249784/126‑1 (MQ=255) ccGCACGATCGCCAAGGGCGGCGACCTGCAGAGGGTGCTCAACGTCATTGAGGAGGCGCGCCTAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCATGTTTTGCCCATGTTGGCGTTCTGCCtt < 1:197810/148‑1 (MQ=255) cGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCtt > 8:240796/1‑147 (MQ=255) gCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTcag > 5:16753/1‑149 (MQ=255) cACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTcag > 1:333543/1‑148 (MQ=255) aCGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTcag > 1:108045/1‑147 (MQ=255) tCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGTCCATGTTGGCGTTCTGCCTTCAGCAGGGc < 8:131745/149‑1 (MQ=255) ccAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTAc < 8:283924/149‑1 (MQ=255) ccAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTAc > 1:318580/1‑149 (MQ=255) aaGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTAc > 5:104988/1‑147 (MQ=255) cggcgACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGc < 7:240796/149‑1 (MQ=255) cgACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGtt < 2:318580/149‑1 (MQ=255) gACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGttt > 3:105959/1‑149 (MQ=255) tGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATc > 6:152697/1‑149 (MQ=255) gCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCGTGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTAc > 6:214339/1‑133 (MQ=255) gCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCGTGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTAc < 5:214339/133‑1 (MQ=255) gCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTcagcag > 2:351376/1‑127 (MQ=255) aGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTTTCGaa < 2:108045/149‑1 (MQ=255) gACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAAc > 5:93852/1‑149 (MQ=255) gACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAAc < 2:333543/149‑1 (MQ=255) ctGCTCAATGCCGTTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTAt > 3:104665/2‑149 (MQ=255) gCTCAATGCCGTTGAGCAGGCGTGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTcagcag < 5:352834/118‑1 (MQ=255) gCTCAATGCCGTTGAGCAGGCGAGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTcagcag > 6:352834/1‑118 (MQ=39) cTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATgc < 1:324100/148‑1 (MQ=255) tCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATgc > 6:221575/1‑147 (MQ=255) tCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATgc < 5:221575/147‑1 (MQ=255) aaCGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATGCGCAt > 8:242289/1‑149 (MQ=255) cGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATGCGCATgg < 6:16753/149‑1 (MQ=255) | ACCACCAATGGCCAGTTGCTGGCCGGCAAACTGCCGTTATTGCTCAGCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAACTTATGCGCATGG > NC_002947/2829676‑2829967 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |