Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,853,772 | A→C | 9.5% | I42L (ATC→CTC) | PP_2506 → | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,853,772 | 0 | A | C | 9.5% | 116.3 / 5.5 | 42 | I42L (ATC→CTC) | PP_2506 | membrane protein |
Reads supporting (aligned to +/- strand): ref base A (15/23); new base C (2/2); total (17/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-01 |
GAGTTAAGTCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTCTGCTGGTGCGAGCGATGACCTCTCACGCCATCCATCG > NC_002947/2853628‑2853914 | gAGTTAAGTCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAg > 8:113282/1‑149 (MQ=255) ttAAGTCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCt < 1:280125/149‑1 (MQ=255) aGTCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGa < 5:21002/148‑1 (MQ=255) aGTCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGa < 1:34762/148‑1 (MQ=255) tCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAAAGGACACAACGACTTCACTGCTGATTTTACATAT‑AACCTGCTGCAATTGCTTGAGCCTGTGGCTGAGTAGGCGCCTGATc > 8:307846/1‑148 (MQ=255) aGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATcaaca < 7:113282/149‑1 (MQ=255) ttAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACtt < 7:288115/148‑1 (MQ=255) agTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATg > 1:131503/1‑149 (MQ=255) tcGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGc < 7:217826/147‑1 (MQ=255) tcGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGATGAGTATCAGCCTGATCAACAACTTGCATGCCTTTTCCAGCTCAGCCg > 3:147713/1‑149 (MQ=255) tttCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGAt > 5:159583/1‑149 (MQ=255) aaagtaaCTCACAAAGTTCCCGGATTGGACACTCCTTATTCACTTCTTATTTTCCAGAT‑CACCTTCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCgggg < 3:15344/143‑1 (MQ=255) tCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGATACTCAGccacag < 8:145783/96‑5 (MQ=255) tCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGATACTCAGccacag > 7:145783/1‑92 (MQ=255) tCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGATACTCAGccaca < 6:243326/95‑4 (MQ=255) tCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGATACTCAGccaca > 5:243326/1‑92 (MQ=255) tCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGTCAGCTCAGCCGGGGCGATCGGGGAGACCATGt > 5:284676/1‑149 (MQ=255) tCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGt < 7:307846/149‑1 (MQ=255) acaAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTc > 6:132242/1‑148 (MQ=255) aaaGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGc > 2:48939/1‑113 (MQ=255) aaaGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGc < 1:48939/113‑1 (MQ=255) ggAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTc < 8:335383/110‑1 (MQ=255) ggAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTc > 7:335383/1‑110 (MQ=255) aaTGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTgg < 3:260365/149‑1 (MQ=255) aTGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGc < 1:138532/149‑1 (MQ=255) tGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGcc < 6:5479/149‑1 (MQ=255) tGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGcc < 6:159583/149‑1 (MQ=255) acacTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCaa > 7:76257/1‑149 (MQ=255) ctgATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGcc < 8:76257/148‑1 (MQ=255) gATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGcctcc > 7:199285/1‑149 (MQ=255) aTTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGcctcc < 1:35677/148‑1 (MQ=255) ttCCAGATCCACTTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGcctccct < 1:302125/148‑1 (MQ=255) cAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGTCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTctgct < 6:284676/149‑1 (MQ=255) cAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTctgct < 2:131503/149‑1 (MQ=255) aGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTcc < 7:50727/127‑1 (MQ=255) aGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTcc > 8:50727/1‑127 (MQ=255) aGAT‑CACATGCTTCATTGGGTTGAGCCTGTGGCTGATTATCAGCCTGATCAACAACATGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGGCGATGGCGCCGCTGGCCCAACCTCCCGCAATCGGCCTCCCTcttctg < 4:147713/149‑1 (MQ=255) aTTGGCTTGAGCCCGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTCTGCTGGTGCGAGCGATGAc < 2:45046/149‑1 (MQ=255) cTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATTGCGCCGCTGGCCCAACCTCCCGCATTCATCCTCCCTCTGCTTGTGCGAGCGATGACCtctc < 6:335947/149‑1 (MQ=255) gAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTCTGCTGGTGCGAGCGATGACCTCTCACg > 3:7214/1‑149 (MQ=255) gAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTCTGCTGGTGCGAGCGATGACCTCTCACg > 3:12239/1‑149 (MQ=255) tGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGAGATCGGGGAGACAATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTCTGCTGGTGCGAGCGATGACCTCTCACGCCATCCATCg > 5:45012/1‑148 (MQ=255) | GAGTTAAGTCAAGGTTTTAGAGTGGCGTCCAGACGCTCTCGCTGCTTTCGGAAACGAACTCACAAAGGACCCGGAATGGACACTCCGACTTCACTGCTGATTTTCCAGAT‑CACCTGCTGCATTGGCTTGAGCCTGTGGCTGAGTATCAGCCTGATCAACAACTTGCATGCCTTTGCCAGCTCAGCCGGGGCGATCGGGGAGACCATGTCGATGGCGCCGCTGGCCCAACCTCCCGCAATCAGCCTCCCTCTGCTGGTGCGAGCGATGACCTCTCACGCCATCCATCG > NC_002947/2853628‑2853914 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |